Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4591 ATGATGGTGGAAACCTCAACATTAGGTCGGTTCCATCACCAAAGACTCGACTTTAAACGCTGCGTTCCAGCATTCATAACCTCACACAAGACCCTCTTCATGGTCTTATGGATCGCAGCATTTTTATCGGTTTTTATATGGCAGAGAAATATGGTTGTTGGTGGGTTTATGGTTTTCGGTCGGGTTCCGGTCCGGCCGATTCCAAATATGAGACCGGTGGTTTTTAATTTGACGGATTTTGGAGGTGTTGGTGATGGGGTTACTCTTAATACTGAAGCATTTGAGAGAGCTGTTTCTGCTATATCTAAATTCGGGAAGAAAGGTGGGGCCCAGTTGAATGTTCCTCCTGGTCGTTGGCTTACTGCACCTTTTAATCTTACCAGTCATATCACTCTCTTTCTAGCTCAAGATGCTGTTATTCTCGCCATTGATGATGAGAAGTATTGGCCACTAATGCCTCCATTGCCTTCGTATGGGTATGGAAGGGAGCGTCCTGGGCCTCGATATGGCAGTTTGATTCATGGTCAGAATCTTAAAGATGTTGTGATAACAGGGCATAATGGCACCATAAATGGACAAGGACAGGCATGGTGGAAAAAATTTCGCCAGAAGCGTCTCAACTATACAAGGGGGCCACTTCTTCAGATCATGTGGTCTAGTGACATTGTAATCACTGATATTACTCTACGTGACTCTCCTTTTTGGACGCTCCATCCATATGACTGTAAAAACCTTACAATAAAAGGTGTTACAATTTTGGCTCCTGTATTTGAAGCTCCAAACACTGACGGCATAGATCCTGACTCTTGCGAGGATATGTTGATAGAGGATTGTTACATAAGTGTGGGAGATGATGCAATAGCAATAAAGAGTGGTTGGGATCAGTATGGAATTGCTTATGGAAGGCCTTCCATGAATATAATGATCCGAAACCTCGTTGTTCGCTCTATGGTCAGTGCCGGTATCTCAATAGGCAGTGAGATGTCTGGTGGGATATCCAATGTCACGGTGGAGAATCTTCTTGTGTGGGATTCTAGGCGGGGTGTGAGGATAAAAACTGCACCTGGACGAGGCGGGTATGTGCGGCAAATAACTTATCGGAATATAACGTTTGAGAATGTCCGTGTTGGAATTGTGATGAAGACAGATTACAATGAACACCCTGATGATGGCTATGACCCTACGGCACTTCCAGTTATAAGAGACATTAGCTTCACCAATGTCTATGGCCATGGAGTTCGTGTGCCGGTACGTATTCACGGTAGTGAAGAGATTCCTGTGAGAAATGTAACTTTTCGTGACATGTCAGTTGGGTTAACCTACAAGAAGAAGCACATCTTTCAGTGTGCATTTGTACATGGCCGTGTAATAGGGACCATTTTCCCATCTCCATGCGAGAACCTTGATCGGTACAATGAGCAAGGACAACTGGTTAAACATTCCATGTCCCAGAATGTAACAGATATAGATTATGATTTTTGA 1482 0.4379 MMVETSTLGRFHHQRLDFKRCVPAFITSHKTLFMVLWIAAFLSVFIWQRNMVVGGFMVFGRVPVRPIPNMRPVVFNLTDFGGVGDGVTLNTEAFERAVSAISKFGKKGGAQLNVPPGRWLTAPFNLTSHITLFLAQDAVILAIDDEKYWPLMPPLPSYGYGRERPGPRYGSLIHGQNLKDVVITGHNGTINGQGQAWWKKFRQKRLNYTRGPLLQIMWSSDIVITDITLRDSPFWTLHPYDCKNLTIKGVTILAPVFEAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNIMIRNLVVRSMVSAGISIGSEMSGGISNVTVENLLVWDSRRGVRIKTAPGRGGYVRQITYRNITFENVRVGIVMKTDYNEHPDDGYDPTALPVIRDISFTNVYGHGVRVPVRIHGSEEIPVRNVTFRDMSVGLTYKKKHIFQCAFVHGRVIGTIFPSPCENLDRYNEQGQLVKHSMSQNVTDIDYDF* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4591 493 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 22 491 - -
Mtr4g4591 493 Pfam Glycosyl hydrolases family 28 170 453 IPR000743 GO:0004650|GO:0005975
Mtr4g4591 493 Gene3D - 64 454 IPR012334 -
Mtr4g4591 493 SMART pbh1 270 291 IPR006626 -
Mtr4g4591 493 SMART pbh1 422 443 IPR006626 -
Mtr4g4591 493 SMART pbh1 304 326 IPR006626 -
Mtr4g4591 493 SMART pbh1 332 353 IPR006626 -
Mtr4g4591 493 SMART pbh1 242 269 IPR006626 -
Mtr4g4591 493 SMART pbh1 361 382 IPR006626 -
Mtr4g4591 493 SMART pbh1 395 417 IPR006626 -
Mtr4g4591 493 PANTHER PECTIN LYASE-RELATED 22 491 - -
Mtr4g4591 493 SUPERFAMILY Pectin lyase-like 66 466 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4591 Mtr-Chr4 59969058 59973570 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4591 10 492 Glycoside Hydrolase AT1G19170 74.949 0.0 778
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4591 - - gmx:100818529 907.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4591 4 59969058 59973570 Mtr4g4591 4 59969058 59973570 ECH
Mtr4g4591 4 59969058 59973570 Mtr2g1662 2 18744609 18749431 PCT