Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4572 ATGGCTACCGAACGTTTGACTCGTGTTCATAGCCTCAAGGAGAGGCTTGATGAAACCTTAACTGCTAATAGGAATGAAATTTTGGCCCTTCTTTCAAGGCTTGAAGCAAAGGGAAAGGGAATTTTGCAACACCATCAAGTGATTGCTGAGTTTGAGGAAATTCCTGAAGATAGTAGACAGAAGTTGACTGATGGTGCATTTGGTGAAGTTTTGAGATCCACACAGGAAGCAATAGTTTTGCCACCATGGGTTGCACTTGCTGTTCGTCCAAGGCCAGGTATTTGGGAGTATCTGAGAGTAAATGTGCATGCTCTTGTTGTTGAAAATTTGCAACCTGCTGAGTTTCTCAAATTCAAGGAAGAACTTGTTGATGGAAGTGCTAATGGAAACTTTGTGCTTGAGTTGGACTTTGAACCATTTACTGCATCTTTCCCTCGTCCTACTCTCAACAAGTCAATTGGAAATGGTGTGCAATTCCTTAATCGCCACCTTTCTGCTAAACTCTTCCATGACAAGGAGAGTTTACATCCACTTTTGGAATTTCTCAGACTTCACAGCTACAAGGGAAAGACATTGATGTTGAATGACAGAATTCAAAACCCTGATTCTCTTCAACATGTTCTGAGGAAAGCTGAAGAGTATCTAAGCACAATTGATCCTGAAACACCATACTCAGAATTTGAACACAGGTTCCAGGAGATTGGTTTGGAGAGAGGTTGGGGAGACACCGCAGAGCGCGTCCTCGAGTCCATCCAACTTCTCTTGGATCTTCTCGAGGCTCCCGACCCTTGCACCCTTGAGACTTTCCTTGATAGAATCCCCATGGTCTTTAATGTTGTCATCCTTTCTCCTCATGGTTACTTTGCTCAAGATGATGTCTTGGGATACCCTGATACTGGAGGCCAGGTTGTTTACATCTTGGATCAAGTTCGTGCCTTGGAGAGCGAGATGCTCAGTCGCATTAAGAAACAAGGCTTGGATATCATCCCTCGCATTCTCATTATCACCCGTCTTCTCCCCGATGCAGTCGGAACGACTTGTGGCCAACGACTTGAGAAGGTCTACGGAACTGAGCATTGCCACATTCTTCGAGTTCCCTTCAGAGATACGAAGGGAATTGTCCGCAAGTGGATCTCACGATTTGAAGTCTGGCCATATCTAGAAACTTACACTGAGGATGTTGCTCATGAGCTTGCCAAAGAGTTGCAAGGCAAACCAGATCTGATTGTTGGAAACTACAGTGATGGAAACATTGTTGCCTCTTTGTTGGCACATAAATTAGGTGTCACTCAGTGTACCATTGCTCATGCACTCGAGAAGACTAAGTACCCCGAATCCGACATTTACTGGAAAAAATTCGAAGAGAAGTATCACTTCTCCTGCCAATTTACCGCTGATCTTTTCGCAATGAACCACACAGATTTCATCATCACTAGTACCTTCCAAGAGATTGCTGGAAGCAAGGACAAGGTTGGACAGTATGAGAGTCACACTGCCTTTACTCTTCCAGGACTCTACCGTGTCGTGCACGGTATTGATGTCTTTGATCCAAAGTTCAACATTGTATCTCCAGGAGCTGATCAGACCATTTACTTCCCTTACACCGAAACTAGCCGCCGATTGACATCCTTCTACCCTGAAATCGAAGAGCTTCTTTACAGCTCAGTTGAGAATGAAGAGCACATATGTGTGCTGAAGGACCGCAACAAGCCAATTATCTTCACCATGGCAAGGTTGGACCGTGTGAAGAACATTACAGGACTTGTTGAGTGGTACGGCAAGAATGCCAAGCTTCGTGAGTTGGTGAACCTTGTTGTTGTTGCCGGAGACAGGAGGAAGGAGTCAAAGGACTTGGAAGAGATAGCTGAGATGAAGAAGATGTATGGCCTAATCGAGACCTACAAGTTGAATGGCCAATTCAGATGGATTTCCTCTCAGATGAACCGTGTCAGAAACGGAGAGCTGTACCGTGTGATTTGTGACACCAAGGGAGCTTTCGTGCAACCTGCTGTGTATGAAGCTTTCGGTTTGACAGTTGTTGAGGCCATGGCTACTGGATTACCAACATTTGCAACTCTTAATGGTGGCCCTGCTGAGATCATTGTCCATGGCAAATCTGGATTCCACATTGATCCTTACCATGGCGACCGTGCTGCTGATCTCCTCGTTGAATTCTTTGAGAAGGTCAAGGTTGATCCATCTCACTGGGACAAGATCTCTCAAGGTGGTCTCCAACGTATTGAAGAGAAGTACACATGGACAATATACTCTCAGAGGCTTCTTACACTCACTGGTGTCTATGGCTTCTGGAAGCATGTGTCTAACCTCGACCGTCTTGAGAGCCGCCGCTATCTTGAGATGTTCTATGCTCTCAAGTACCGCAAATTGGCTGAGTCTGTGCCCCTAGCTGTTGAGTAA 2418 0.4537 MATERLTRVHSLKERLDETLTANRNEILALLSRLEAKGKGILQHHQVIAEFEEIPEDSRQKLTDGAFGEVLRSTQEAIVLPPWVALAVRPRPGIWEYLRVNVHALVVENLQPAEFLKFKEELVDGSANGNFVLELDFEPFTASFPRPTLNKSIGNGVQFLNRHLSAKLFHDKESLHPLLEFLRLHSYKGKTLMLNDRIQNPDSLQHVLRKAEEYLSTIDPETPYSEFEHRFQEIGLERGWGDTAERVLESIQLLLDLLEAPDPCTLETFLDRIPMVFNVVILSPHGYFAQDDVLGYPDTGGQVVYILDQVRALESEMLSRIKKQGLDIIPRILIITRLLPDAVGTTCGQRLEKVYGTEHCHILRVPFRDTKGIVRKWISRFEVWPYLETYTEDVAHELAKELQGKPDLIVGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPESDIYWKKFEEKYHFSCQFTADLFAMNHTDFIITSTFQEIAGSKDKVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADQTIYFPYTETSRRLTSFYPEIEELLYSSVENEEHICVLKDRNKPIIFTMARLDRVKNITGLVEWYGKNAKLRELVNLVVVAGDRRKESKDLEEIAEMKKMYGLIETYKLNGQFRWISSQMNRVRNGELYRVICDTKGAFVQPAVYEAFGLTVVEAMATGLPTFATLNGGPAEIIVHGKSGFHIDPYHGDRAADLLVEFFEKVKVDPSHWDKISQGGLQRIEEKYTWTIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE* 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4572 805 TIGRFAM sucr_synth: sucrose synthase 24 802 IPR012820 GO:0005985|GO:0016157
Mtr4g4572 805 Pfam Glycosyl transferases group 1 564 727 IPR001296 GO:0016757
Mtr4g4572 805 Gene3D Glycogen Phosphorylase B; 280 796 - -
Mtr4g4572 805 Gene3D - 146 275 - -
Mtr4g4572 805 Gene3D Glycogen Phosphorylase B; 527 753 - -
Mtr4g4572 805 PANTHER SUCROSE SYNTHASE 1 805 - -
Mtr4g4572 805 Pfam Sucrose synthase 8 553 IPR000368 GO:0005985|GO:0016157
Mtr4g4572 805 Gene3D - 25 145 - -
Mtr4g4572 805 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 295 763 - -
Mtr4g4572 805 PANTHER - 1 805 IPR012820 GO:0005985|GO:0016157
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4572 Mtr-Chr4 59771811 59776845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4572 2 805 Glycosyltransferase AT3G43190 83.458 0.0 1410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4572 K00695 - gmx:547508 1528.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4572 4 59771811 59776845 Mtr4g4572 4 59771811 59776845 ECH
Mtr4g4572 4 59771811 59776845 Mtr2g1693 2 19341979 19349415 PCT