Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4452 ATGAACTCAATTCCCTCTCCTCCACCTTCTTCATCTCCAAGTTCTACAATTCTCACTCAATCCAAAAACCCTAACTATCTCTTCAAATTCAACCTCAAAGTTCCCATTTTACCCTTCCATTCTTCATCTTCCCACCTCACTGCACATGCACCGTGTTGCACTCTCAGGGACTCAAATTCAGTGTTGGAGAAAAATGCCCCTTCCTCCGAGCAGAGTACCCGAAATTACATTCCACCGAAAGACTCAAACTTTGATGGAACGCTTGTGGTTCGCCGGCCGGAGTTTTCCGGTGAAAACTCCGGTGAGGAGGTGAAAAAGGAGAAGGAAATTGTGAAAGAGGAAGCTAAAGCTTCTTCAATTGATGTTGGGTTAACGACATTTGCGAAGAAGATGCCGATATTTGAACCGGGGAGAGTTGAATCAGACTCCAAAGATAAGCTTTTGACTGTGAATTTGGACTTGGCGTTGTATAAAGCTAAGGTTTTGGCTAGAAACTTTCGTTATGAAGAAGCAGAGGAAATGCTTCTGAAGTGTTTAAGCTATTGGCCAGAAGATGGTAGACTTTACGTGGCACTCGGGAAAATTATGATCAAGCAATCTAAAACGAGTCAAGCTAGAGAGATTTATGAGAAGGGTTGCCAGGCTACTCAGGGTGAAAATGCATTCATATGGCAGTGTTGGGCTGTTCTTGAAAAGAAAATGGGAAATGTCAGGAGAGCAAGAGAACTTTTCGATGCCGCAACGGTTGCTGATAAGAAACATGTTGCTGCTTGGCATGGTTGGGCAGTTCTAGAGTTAAAGCAAGGAAATATAACGAAGGCAAGGAATCTGCTTTCGAAAGGTCTTCAATATTGTGGACAGAATGAGTACATATACCAAACACTTGCATTGCTTGAAGCTAAGGCAAATAGATATCAGCAGGCTCGATATTTATTCAATCAGGCCACAAGGTGTAATCCTAAAAGCTGTGCTAGTTGGCTTGCTTGGGCTCAAATGGAGGTGGAACAGGAAAACTATCGTATCGCTAGGAAATTGTTTGAGAATGCAGTGCAAGCGAGTCCTAAAAATAGGTTCGCTTGGCATGTCTGGGGCATTTTTGAAGCTAACCTGGGCAAGATTGACAAGGGAAGAAAACTTCTAAAGATAGGCCATGCTCTAAATCCAAGGGATGCTGTTCTCCTTCAGTCTCTTGCATTAATAGAATACAAACACTCAAGTGCTAATCGTGCTCGTGTTTTGTTCAAGAGAGCGTCTGAATTGGATCCCAAGCATCAACCTGTTTGGTTTGCTTGGGGTTGGATGGAATGGAAGGAAGGAAATTTGAATACTGCTCGAGAATTATACCGAAAAGCTTTATCAATTGATCAGAACAGTGAGAGTGCTGCAAGGTGTCTCCAGGCATGGGGTGTTCTGGAGCAGAGGGTTGGGAATCTTTTGGCTGCTCGAAGATTGTTTAGATCCTCGTTGAATATAAATTCTCAGAGTTATGTGACATGGATGACATGGGCATCACTGGAGGAAGATCAAGGAAATCCTGTGCGTGCTGAAGAAATTCGTAACCTTTACTTCCAGCAGCGCACAGAAGTTGTAGATGATGCTTCGTGGGTTATGGGATTCTTAGATATTTTAGACCCTGCCATTGACAGTTTGAGGAGACTCCTGAAGATGAACCCGAATTCGTTCAACGTGCCACCTGATTCCATGAGAAATATTACCGGATCGAAGAAAAACATGGTTGATTATTCTAGTGAGGATGATGATAATGATGTGGACAATGACAGCGAGTTTGATTTGGATGCTTTCATTATGGACAGGTTATCCATAGATGTGTCCAAGCTGGAAGTTCAACTGGAAACGCCGAAATTTCCTTCTACTAACAAAATTTTGTCTCCAAGAAGGATATGGCGACCAAGTAGTAGAACTGCCAACCAAAGTGTAAGTTCAAAATACAGGTAA 1956 0.4274 MNSIPSPPPSSSPSSTILTQSKNPNYLFKFNLKVPILPFHSSSSHLTAHAPCCTLRDSNSVLEKNAPSSEQSTRNYIPPKDSNFDGTLVVRRPEFSGENSGEEVKKEKEIVKEEAKASSIDVGLTTFAKKMPIFEPGRVESDSKDKLLTVNLDLALYKAKVLARNFRYEEAEEMLLKCLSYWPEDGRLYVALGKIMIKQSKTSQAREIYEKGCQATQGENAFIWQCWAVLEKKMGNVRRARELFDAATVADKKHVAAWHGWAVLELKQGNITKARNLLSKGLQYCGQNEYIYQTLALLEAKANRYQQARYLFNQATRCNPKSCASWLAWAQMEVEQENYRIARKLFENAVQASPKNRFAWHVWGIFEANLGKIDKGRKLLKIGHALNPRDAVLLQSLALIEYKHSSANRARVLFKRASELDPKHQPVWFAWGWMEWKEGNLNTARELYRKALSIDQNSESAARCLQAWGVLEQRVGNLLAARRLFRSSLNINSQSYVTWMTWASLEEDQGNPVRAEEIRNLYFQQRTEVVDDASWVMGFLDILDPAIDSLRRLLKMNPNSFNVPPDSMRNITGSKKNMVDYSSEDDDNDVDNDSEFDLDAFIMDRLSIDVSKLEVQLETPKFPSTNKILSPRRIWRPSSRTANQSVSSKYR* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4452 651 ProSiteProfiles TPR repeat profile. 425 458 IPR019734 GO:0005515
Mtr4g4452 651 MobiDBLite consensus disorder prediction 63 83 - -
Mtr4g4452 651 SUPERFAMILY TPR-like 359 559 IPR011990 GO:0005515
Mtr4g4452 651 Pfam Tetratricopeptide repeat 427 457 IPR019734 GO:0005515
Mtr4g4452 651 Gene3D Tetratricopeptide repeat domain 404 572 IPR011990 GO:0005515
Mtr4g4452 651 Gene3D Tetratricopeptide repeat domain 146 392 IPR011990 GO:0005515
Mtr4g4452 651 ProSiteProfiles TPR repeat profile. 289 322 IPR019734 GO:0005515
Mtr4g4452 651 SMART tpr_5 289 322 IPR019734 GO:0005515
Mtr4g4452 651 SMART tpr_5 221 254 IPR019734 GO:0005515
Mtr4g4452 651 SMART tpr_5 462 495 IPR019734 GO:0005515
Mtr4g4452 651 SMART tpr_5 357 390 IPR019734 GO:0005515
Mtr4g4452 651 SMART tpr_5 323 356 IPR019734 GO:0005515
Mtr4g4452 651 SMART tpr_5 391 424 IPR019734 GO:0005515
Mtr4g4452 651 SMART tpr_5 255 288 IPR019734 GO:0005515
Mtr4g4452 651 SMART tpr_5 186 219 IPR019734 GO:0005515
Mtr4g4452 651 SMART tpr_5 425 458 IPR019734 GO:0005515
Mtr4g4452 651 SMART tpr_5 152 185 IPR019734 GO:0005515
Mtr4g4452 651 PANTHER PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107 13 640 IPR044624 GO:0003729|GO:0006397
Mtr4g4452 651 SUPERFAMILY TPR-like 167 401 IPR011990 GO:0005515
Mtr4g4452 651 MobiDBLite consensus disorder prediction 63 80 - -
Mtr4g4452 651 SMART hat_new_1 439 474 IPR003107 GO:0006396
Mtr4g4452 651 SMART hat_new_1 405 437 IPR003107 GO:0006396
Mtr4g4452 651 SMART hat_new_1 337 369 IPR003107 GO:0006396
Mtr4g4452 651 SMART hat_new_1 303 335 IPR003107 GO:0006396
Mtr4g4452 651 SMART hat_new_1 235 267 IPR003107 GO:0006396
Mtr4g4452 651 SMART hat_new_1 200 233 IPR003107 GO:0006396
Mtr4g4452 651 SMART hat_new_1 476 508 IPR003107 GO:0006396
Mtr4g4452 651 SMART hat_new_1 371 403 IPR003107 GO:0006396
Mtr4g4452 651 SMART hat_new_1 269 301 IPR003107 GO:0006396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4452 - - mtr:MTR_4g122060 1243.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4452 4 58518328 58524737 Mtr4g4452 4 58518328 58524737 ECH