Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4448 ATGGCGGACAAGTACAACATGAAGAATCCAGCTGTCAAGCGGATTCTCCAAGAGGTCAAAGAGATGCAATCAAACCCTTCCGATGATTTCATGAGCCTTCCTCTCGAGGAAAATATATTTGAATGGCAATTTGCAATTAGGGGTCCTCGTGAAACTGAATTTGAAGGTGGAATTTATCATGGAAGGATTCAATTACCTGCTGAATATCCATTCAAACCTCCTTCGTTTATGTTGTTGACTCCTAATGGTCGTTTTGAGACGCAAACGAAGATTTGTTTGAGCATATCAAATCATCATCCTGAGCATTGGCAACCATCATGGAGTGTAAGGACTGCTCTAGTTGCATTGATTGCATTCATGCCCACCAACCCAAACGGTGCCTTGGGCTCATTAGACTACAAGAAAGAAGATAGGCGTGCCTTGGCCATTAAATCCCGTGAAGCATCTCCAAAATTTGGGACTCCTGAACGTCAAAAACTGATTGATGAGATACATGAGTATATGCTGAGCATGGCAGCCGTTGTTCCTCAACCCAGCCCTCTGCAGGCTTCTGAAGAACCCAAAAATGAGGAGGCTGAGACCCAAGTTACTCAAAATCCTGAGGCTCCACCTGCAGGAGAGGGGATTCCAGATCAAGCAGGTGACGGAATAGTTGAAGAGCAAGAAGTCAATGTCAATGCTAATCCTAACCCGGCAGGAGTTGAAGCTTCAAATGAGACTCCATCCGGCGTCTCAACCAATCAATTGCCCCGAAAGTCAGATACCAGGGTTCAAAATCTGAAGCCAGAGACAAGGGTTCAAAAACCTGATGACCGATTGTTTACTCTGGCAGCTATTGGACTTGCTATAGCTATCATGGTTCTTTTGCTGAAGAAATTCATTAAATCTACGGAACATGGAGCAGTTTTCATGAATGGATCTTAG 924 0.4426 MADKYNMKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPRETEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEDRRALAIKSREASPKFGTPERQKLIDEIHEYMLSMAAVVPQPSPLQASEEPKNEEAETQVTQNPEAPPAGEGIPDQAGDGIVEEQEVNVNANPNPAGVEASNETPSGVSTNQLPRKSDTRVQNLKPETRVQKPDDRLFTLAAIGLAIAIMVLLLKKFIKSTEHGAVFMNGS* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4448 307 MobiDBLite consensus disorder prediction 227 264 - -
Mtr4g4448 307 MobiDBLite consensus disorder prediction 177 213 - -
Mtr4g4448 307 Gene3D Ubiquitin Conjugating Enzyme 2 194 IPR016135 -
Mtr4g4448 307 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 10 173 IPR000608 -
Mtr4g4448 307 SMART ubc_7 13 173 - -
Mtr4g4448 307 SUPERFAMILY UBC-like 11 132 IPR016135 -
Mtr4g4448 307 MobiDBLite consensus disorder prediction 227 255 - -
Mtr4g4448 307 Pfam Ubiquitin-conjugating enzyme 14 125 IPR000608 -
Mtr4g4448 307 CDD UBCc 12 151 IPR000608 -
Mtr4g4448 307 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 6 307 - -
Mtr4g4448 307 PANTHER BNAC01G21910D PROTEIN 6 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4448 Mtr-Chr4 58473863 58476799 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4448 1 305 Miscellaneous Gene Families AT3G17000 65.605 6.94e-136 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4448 K10578 - gmx:100804054 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4448 4 58473863 58476799 Mtr4g4448 4 58473863 58476799 ECH