Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4105 ATGTCCATAAACTTTAACTTTAATGCCTTTGCCGGCAACCCTCTACGCTCAATTCTACCCTCCGCAGCAGCTCTCCAATCCCTCAACACAACAATTCTACAAAACGATCACTCTTCTTCTTCCCCGAATTTCAAGGTACTTCCTTTCAGAAATGGAAGGCCTTTAGCTTCTTCCACTGCCGGTTTCGGTGACTCTCCGCCGATTTGGCATCTGGGTTGGATCAATTTGGATGACCTCAGAGGTATTTTTGAAAACTCCGGTGCCCAGTTGAATGGAGACTCGTTTGTCTACTTGGGTTCGAGTGTAGAGGAAGATAACGTTTACTGGGCTATCGATGTTTCTGATAAGGTACCTGAATTGGGTACTGACAAGGAGATGGAGTTGAGTTTTGTAGAGCTCCGGACTCTCATGGTGGCCACTGATTGGGAGGATTTGAAAGCAATGGAAAACTTGACTATTGCTGGTAATGCCAAGGCACTGCTAGAATGGCACAAGACTTCACAATTTTGTGGACATTGTGGTGCGAAAACTGTTTCAATGGAAGCTGGGAGACGGAAGCAATGTTCGAATGATTCTTGCAAGAAAAGGATATATCCACGTCTTGATCCAGTGGTAATTATGCTTGTAATTGATAGAGAGAATGACTCTGTTCTCTTGGGTACACGGCCAAAGCTTATTTCTCGATTGTGGAGCTGCTTATCTGGTTTCACAGAGCAAGGAGAAAGCTTGGAGGAAGCTGTAAGAAGAGAAACTTGGGAAGAGAGTGGTATTGAAGTGGGAGAAGTTGTATATCACAGTTCTCAGCCATGGCCTGTTGGACCAAACAGCGTTCCATACCAGCTGATGGTTGGATTCTTTGCATATGCGAAATCACGCGAAATAACTGTCGACAAGAAAGAGTTAGAAGATGCTCAGTGGTTCAGTAGAGAAGATATAAGAAAAGCATTGATGATGGCTGAATACAAGAAAGCCCAAAGAACAGCAGCAACAAAGGTAGAACAAATGTGTAAGGGAGTAGAAAAGAGTAGGAGTTTGGCTGCAGATTTCAACGTGGAAAGTGGTGAACTTGCTCCAATATTTGTTCCCGGACCTTTTGCCATAGCCCATCACCTTATTTCCTCTTGGGCCTTCTCAGATCAAAATACACTGTAA 1152 0.4401 MSINFNFNAFAGNPLRSILPSAAALQSLNTTILQNDHSSSSPNFKVLPFRNGRPLASSTAGFGDSPPIWHLGWINLDDLRGIFENSGAQLNGDSFVYLGSSVEEDNVYWAIDVSDKVPELGTDKEMELSFVELRTLMVATDWEDLKAMENLTIAGNAKALLEWHKTSQFCGHCGAKTVSMEAGRRKQCSNDSCKKRIYPRLDPVVIMLVIDRENDSVLLGTRPKLISRLWSCLSGFTEQGESLEEAVRRETWEESGIEVGEVVYHSSQPWPVGPNSVPYQLMVGFFAYAKSREITVDKKELEDAQWFSREDIRKALMMAEYKKAQRTAATKVEQMCKGVEKSRSLAADFNVESGELAPIFVPGPFAIAHHLISSWAFSDQNTL* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4105 383 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 200 341 - -
Mtr4g4105 383 ProSiteProfiles Nudix hydrolase domain profile. 199 329 IPR000086 -
Mtr4g4105 383 PANTHER NUDIX HYDROLASE, NUDC SUBFAMILY 1 383 - -
Mtr4g4105 383 Pfam NUDIX domain 203 320 IPR000086 -
Mtr4g4105 383 Pfam NADH pyrophosphatase-like rudimentary NUDIX domain 46 163 IPR015375 GO:0016787
Mtr4g4105 383 Pfam NADH pyrophosphatase zinc ribbon domain 166 197 IPR015376 GO:0016787|GO:0046872
Mtr4g4105 383 SUPERFAMILY Nudix 150 328 IPR015797 -
Mtr4g4105 383 CDD NADH_pyrophosphatase 203 376 - -
Mtr4g4105 383 Gene3D - 65 199 - -
Mtr4g4105 383 ProSitePatterns Nudix box signature. 235 256 IPR020084 GO:0016787
Mtr4g4105 383 PANTHER NUDIX FAMILY HYDROLASE 1 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4105 Mtr-Chr4 55016116 55019647 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4105 K03426 - gmx:100793335 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4105 4 55016116 55019647 Mtr4g4105 4 55016116 55019647 ECH
Mtr4g4105 4 55016116 55019647 Mtr2g2004 2 29025082 29031789 PCT