Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4056 ATGGATGAAAACTTCGACGGATTCAATGATAAACTCCCCGAGCTCAAACTAGATTCCAAGCAAGCACAAGGGTTTCTTTCGTTTTTCAAAACCCTACCTCATGATCCGAGGGCCATTAGGTTCTTTGACCGTCGGGATTACTATACCGCCCATGGTGAGAATGCAACATTCATTGCCAAAACCTACTATCACACTACTACTGCTCTGCGACAGTTGGGTAGTGGATCAAACGCTCTTTCCAGTGTGAGTGTCAGTAGGAACATGTTCGAAACAATAGCCCGTGATCTACTCTTGGAGAGAACAGACCATACACTTGAGGTCTACGAGGGCAGCAGCTCTAACTGGCAACTGGCCAAAAGCGGTACACCTGGTAATATTGGCAGTTTTGAAGATGTTCTGTTTGCTAACAGTGAAATGCAAGATTCTCCAGCTGTTGTTGCGCTGTCACTTAACTTCCGTGAAAATGGGTGCACCATTGGATTAGGCTTTGTTGATCTAACTAAGAGACTACTTGGGATGGCTGAATTCCTCGATGACAGTCACTTCACGAATGTGGAGTCAGCATTGGTTGGTCTTGGATGCAAAGAATGCCTTGTACCAATTGAGCGTGGAAAATCTATTGAATACAAAATGTTGTGTGATGTGTTGACTAAATGTGGTGTGATGCTGACTGAGAGAAAGAAATCTGAGTTTAAGACTAGAGATCTGGTACAGGATCTTGGAAGGCTTGTCAAAGGTTCTATAGAAGCAGTTCAAGATTTAGTGTCTGGATTTGAATTTGCACCGGGTGCTTTAGGGGCACTGCTCTCTTATGCAGAGTTACTTGCAGACGAAAGCAATTATGAAAATTATACTCTGCGTAGGTACAATCTTGACAGTTACATGAGGTTAGATTCTGCAGCCATGAGGGCACTTAATATCTTAGAAAGCAAAACTGATGCAAACAAAAATTTCAGTTTATTTGGTCTCATGAATAGGACCTGTACAGCTGGAATGGGAAAACGACTATTGCATATGTGGCTAAAACAGCCATTATTAGATGTAAACGATATTAACTCCAGGTTGGATGTAGTACAAGCATTTGTAGAGGACACCGTGCTTCGCCAAGATCTGAGACAGCATCTGAAAAGAATATCAGACATTGAGCGACTGGTGCACAATCTTCAGAAGGGAAAAGCTGGTCTACAACATGTTGTTAAACTTTATCAGTCAAGTATAAGACTGCCTTACATTAAAAGTGCTCTGGACAGGTATGATGGACAGTTTTCTTCAATGATGAAGAGCAGGTATTTGAAAGATTTGGAGTTATTGACTGGTGCTGATCGCCTAAACAAATTTATTGAGCTTGTAGAAATTTGTGTTGACCTTGATCATCTAGAGAACGGGGAATACATGATTTCTTCAAGTTATGACACTACGCTAACTGGACTGAAGGAGCAGCAAGAATTACTGGAGAGCCAAATACATGACTTGCATAAACAAACTGCCATTGATCTTGATCTGCCTGTAGATAAGGCATTAAAGTTAGACAAGGGGACACAATTTGGACATGTTTTTAGAATCACAAAGAAGGAAGAGCCGAAAATAAGGACAAAGCTCAACACCCAGTTTATCGTGCTGGAAACCCGTAAAGATGGAGTGAAGTTTACCAACACTAAGCTAAAAAAATTAGGGGACAAATATCAACAAATTCTTGAAGAGTACAAAAGTTATCAAAAACAGTTGGTTGTAAAAGTAGTAGGAATTTCAGCATCTTTCTCTGAGGTGTTTGAATCTTTAGCTGAATTGATTTCCGAATTGGACGTGTTACTAAGCTTTGCTGATTTGGCTTCTAGTTGTCCTACTCCCTATACAAGACCTGACATCACCTCATCGGACGAAGGAGATATTATTTTAGAAGGTAGTAGACACCCTTGTGTGGAGGCTCAAGACTGGGTGAATTTCATACCAAATGATTGTAAGCTTATCAGAGGAAAAAGTTGGTTTCAAATAATAACAGGGCCTAACATGGGTGGGAAATCAACATTTATCCGGCAGGTGGGAGTGAATATTTTGATGGCTCAAGTTGGTTGCTTTGTTCCATGTGACAAAGCGAGCATATCTGTTCGTGATTGCATTTTTGCTCGTGTTGGTGCAGGTGATTGCCAACTTCGTGGAGTTTCTACCTTTATGCAAGAAATGCTTGAAACTTCATCAATATTAAAAGGAGCTACCGACAAGTCCTTGATAATCATTGATGAGTTGGGACGTGGGACATCAACTTACGACGGATTTGGTCTTGCTTGGGCCATTTGTGAGCACATTGTTGATGTGATCAAAGCACCTACTTTATTTGCAACCCACTTTCATGAGCTGACTGCATTAGCCGATGAAAATGGCAGCAATGATACACATAAGCAAATTGTTGGTGTGGCAAATTATCATGTTAGTGCACATATTGATGCATCAACTCGCAAGCTAACTATGCTATACAAGGTGGAACCAGGAGCTTGTGATCAGAGTTTCGGTATTCATGTCGCTGAGTTTGCAAACTTCCCTGAAAGTGTTGTCGCCTTAGCTAGAGAAAAGGCAGCAGAATTGGAAGATTTTTCTCCTTCTGCCCTATCCTTAATGGAATCTACAGAAGAGGTGGGTTCTAAACGTAAGAGAGTGTTTGAAGCTGATGAGATGTCTAAAGGGGCCGTAAAGGCTCGCCAGATTCTTGAAGCATTTGTTGCTTTGCCACTAGAAACCATGGACAAAACGCAAGCTTGGCAAGAAGTAAGGAAATTGAAAGATAATTTAGAGAAGGATGCACAACACTGTCATTGGTTGCAAAAGTTCTAG 2826 0.4119 MDENFDGFNDKLPELKLDSKQAQGFLSFFKTLPHDPRAIRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGSGSNALSSVSVSRNMFETIARDLLLERTDHTLEVYEGSSSNWQLAKSGTPGNIGSFEDVLFANSEMQDSPAVVALSLNFRENGCTIGLGFVDLTKRLLGMAEFLDDSHFTNVESALVGLGCKECLVPIERGKSIEYKMLCDVLTKCGVMLTERKKSEFKTRDLVQDLGRLVKGSIEAVQDLVSGFEFAPGALGALLSYAELLADESNYENYTLRRYNLDSYMRLDSAAMRALNILESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNDINSRLDVVQAFVEDTVLRQDLRQHLKRISDIERLVHNLQKGKAGLQHVVKLYQSSIRLPYIKSALDRYDGQFSSMMKSRYLKDLELLTGADRLNKFIELVEICVDLDHLENGEYMISSSYDTTLTGLKEQQELLESQIHDLHKQTAIDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRTKLNTQFIVLETRKDGVKFTNTKLKKLGDKYQQILEEYKSYQKQLVVKVVGISASFSEVFESLAELISELDVLLSFADLASSCPTPYTRPDITSSDEGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGCFVPCDKASISVRDCIFARVGAGDCQLRGVSTFMQEMLETSSILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVDVIKAPTLFATHFHELTALADENGSNDTHKQIVGVANYHVSAHIDASTRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVALAREKAAELEDFSPSALSLMESTEEVGSKRKRVFEADEMSKGAVKARQILEAFVALPLETMDKTQAWQEVRKLKDNLEKDAQHCHWLQKF* 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4056 941 Pfam MutS family domain IV 470 567 IPR007861 GO:0005524|GO:0006298|GO:0030983
Mtr4g4056 941 Pfam MutS domain II 146 284 IPR007860 GO:0005524|GO:0006298|GO:0030983
Mtr4g4056 941 SMART DNAend 315 643 IPR007696 GO:0005524|GO:0006298|GO:0030983
Mtr4g4056 941 SMART mutATP5 660 858 IPR000432 GO:0005524|GO:0006298|GO:0030983
Mtr4g4056 941 Pfam MutS domain I 24 129 IPR007695 GO:0005524|GO:0006298|GO:0030983
Mtr4g4056 941 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 617 862 IPR027417 -
Mtr4g4056 941 SUPERFAMILY DNA repair protein MutS, domain II 157 310 IPR036678 GO:0005524|GO:0006298|GO:0030983
Mtr4g4056 941 PIRSF MSH2 9 941 IPR011184 GO:0005524|GO:0006298|GO:0030983
Mtr4g4056 941 Gene3D DNA repair protein MutS, domain I 9 122 IPR016151 GO:0005524|GO:0006298|GO:0030983
Mtr4g4056 941 Pfam MutS domain V 663 861 IPR000432 GO:0005524|GO:0006298|GO:0030983
Mtr4g4056 941 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 24 927 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Mtr4g4056 941 Gene3D MutS, connector domain 123 292 IPR036678 GO:0005524|GO:0006298|GO:0030983
Mtr4g4056 941 PANTHER DNA MISMATCH REPAIR PROTEIN MSH2 24 927 IPR032642 GO:0003677|GO:0005524|GO:0006298|GO:0032300
Mtr4g4056 941 Gene3D - 618 938 IPR027417 -
Mtr4g4056 941 CDD ABC_MSH2_euk 631 861 - -
Mtr4g4056 941 Coils Coil 554 574 - -
Mtr4g4056 941 Coils Coil 474 494 - -
Mtr4g4056 941 Gene3D - 524 617 - -
Mtr4g4056 941 Gene3D - 295 523 - -
Mtr4g4056 941 Pfam MutS domain III 301 607 IPR007696 GO:0005524|GO:0006298|GO:0030983
Mtr4g4056 941 SUPERFAMILY DNA repair protein MutS, domain III 298 612 IPR036187 -
Mtr4g4056 941 ProSitePatterns DNA mismatch repair proteins mutS family signature. 741 757 IPR000432 GO:0005524|GO:0006298|GO:0030983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4056 Mtr-Chr4 54399911 54410771 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4056 K08735 - gmx:100792272 1647.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4056 4 54399911 54410771 Mtr4g4056 4 54399911 54410771 ECH