Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3990 ATGTGGTGGGAAAAAGTTGAGGTGAAAACGTTGAACGGAAAAGAAGATTCTGGTGGAGATGGGCCAGGGAAGAGGTGGGGTCATACTTGTAACTCCATTAATGGTGGTAGACATATCTATGTTTTTGGTGGTTATGGTAAAGATAACTGTCAAACCAACCAAGTTCATATCTTTGATACTGTGAATCAGACATGGAGCCAACCTGCAATAAAAGGCACCCCACCGACCCCGAGGGACAGTCACACTTGCAGTGTCGTTGGTCATCGACTATTTGTGTTTGGTGGTACTGATGGAACAAATCCACTCAAGGATTTGCACATATTAGACACTTCTTTGCAAACTTGGGATTCTCCAATTATAAGAGGAGAAGGGCCAGAGGCTCGTGAGGGTCATAGTGCAGCAGTTGTTGGCAAGCGGCTTTATATCTTTGGAGGTTGTGGAAAATCCGCTGATAATAACAATGAGGTCTACTACAATGATCTTTACATACTGAATACAGAGACACTTGTTTGGATGCGTCCTACAACATCAGGCACGCCACCATCTCCTCGTGATAGCCACTCATGCTCGACGTGGAAGAACAGAATTATTGTGATAGGGGGTGAAGACGGGCATGATTATTATTTGTCTGACGTCCATATCTTTGACACTGATACTCTGAACTGGAGGGAGCTGAGTACATCAGGCCAATTGTTGCCACCTCGGGCTGGTCATTCCACAGTTTCTTTTGGCAAGAACTTGTTTGTTTTTGGTGGATTTACAGATGCCCAAAATCTATACAACGACCTTTATACGCTTGATGTTGATACTGGTATTTGGAGAAACAATACAACTACAACCAATTGTCCTTCTGCTAGATTTTCTGTAGCTGGTGACTGTTTAGACCCATCTATGGGTGGTGTTCTTGTGTTTATCGGCGGTTGTAATAAGAGTCTTGAAGCCCTGGATGATATGTATTACTTACATACAGGTATTTCTAGGGAAAGTGAACTGAGACCAGAGAAATTATCTATGAAGAAGATACTGAAGCTGAAATGCCAAGAAGACCAAAATCTCATTCCTGGCCAAAATCAAGATATGGGTAGATATGGAGTGGGTAATGATGCCGGTCAGGTCACGACTATGATGAATTATAGCCAGCCAAGTAGACCAAATATCCCGGCAAATCAATCACTGCCTCTACATGGAAAGAAAACATTTGAAGCCAAGGTTACTGAAAACATCTCAGAAGGATATACTATTGAAACTGTTATTGATGGAAAGCCTCTTCGTGGAATTCTGTTTTTAAACAAACAAAACTCTCTTCACTCATCTGCTCATGCTTTCAATAGGAAAAGGACTGCTGGTGAAATTGATGGTGTCATCTCAAATGGTACACATTCTAACAAATTGAAGACTCATAAAGTGAATCAAATGGAAAATAGACATTCAGAATCTCTTTATCACAGTTCTGAAGCTGTTGTTGCACTTGCAGCAAGGAATCCAATGACTGCCAATGCTTCGGTTAACCACAAGGTTCCTACCAACCCAGGACTAGAAGCTGCTTCTTTGAATCGAAATGCTGAAAAAATTGAAACACCAACCTTGGGGGTAAACTTGAAAAATGATAGAGCAAATGATGTGACAAACTCTAGAGTTGAAGCCCAATCAAATATGCCGATTTCCAACTCAGAAGTTTCAAGACTCGATAAAAATAGTGATCCATCAAACTGCAACACAGAATTTATGAAACCCGCCACAGCTGAGAGTGCTGTGAATTTGTCAAATCAAGGTGCACTGGTGGATTCTACAATACCAAGGACAGGAGAATGCAGTGAACCAGCAAAATGA 1830 0.4153 MWWEKVEVKTLNGKEDSGGDGPGKRWGHTCNSINGGRHIYVFGGYGKDNCQTNQVHIFDTVNQTWSQPAIKGTPPTPRDSHTCSVVGHRLFVFGGTDGTNPLKDLHILDTSLQTWDSPIIRGEGPEAREGHSAAVVGKRLYIFGGCGKSADNNNEVYYNDLYILNTETLVWMRPTTSGTPPSPRDSHSCSTWKNRIIVIGGEDGHDYYLSDVHIFDTDTLNWRELSTSGQLLPPRAGHSTVSFGKNLFVFGGFTDAQNLYNDLYTLDVDTGIWRNNTTTTNCPSARFSVAGDCLDPSMGGVLVFIGGCNKSLEALDDMYYLHTGISRESELRPEKLSMKKILKLKCQEDQNLIPGQNQDMGRYGVGNDAGQVTTMMNYSQPSRPNIPANQSLPLHGKKTFEAKVTENISEGYTIETVIDGKPLRGILFLNKQNSLHSSAHAFNRKRTAGEIDGVISNGTHSNKLKTHKVNQMENRHSESLYHSSEAVVALAARNPMTANASVNHKVPTNPGLEAASLNRNAEKIETPTLGVNLKNDRANDVTNSRVEAQSNMPISNSEVSRLDKNSDPSNCNTEFMKPATAESAVNLSNQGALVDSTIPRTGECSEPAK* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3990 609 SUPERFAMILY Galactose oxidase, central domain 14 226 IPR011043 -
Mtr4g3990 609 Pfam Galactose oxidase, central domain 25 75 - -
Mtr4g3990 609 Pfam Kelch motif 77 115 IPR006652 GO:0005515
Mtr4g3990 609 Gene3D - 227 335 IPR015915 GO:0005515
Mtr4g3990 609 PANTHER KELCH REPEAT DOMAIN 3 453 - -
Mtr4g3990 609 Gene3D - 6 226 IPR015915 GO:0005515
Mtr4g3990 609 Pfam Kelch motif 125 168 - -
Mtr4g3990 609 Pfam Galactose oxidase, central domain 194 242 - -
Mtr4g3990 609 Pfam Galactose oxidase, central domain 246 288 - -
Mtr4g3990 609 PANTHER GALACTOSE OXIDASE/KELCH REPEAT SUPERFAMILY PROTEIN 3 453 - -
Mtr4g3990 609 SMART kelc_smart 38 88 IPR006652 GO:0005515
Mtr4g3990 609 SMART kelc_smart 195 245 IPR006652 GO:0005515
Mtr4g3990 609 SMART kelc_smart 89 138 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3990 Mtr-Chr4 53636573 53642986 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3990 115 321 Acyl Lipid Metabolism Gene Families AT3G05420 31.797 1.26e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3990 - - cam:101509662 986.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3990 4 53636573 53642986 Mtr4g3990 4 53636573 53642986 ECH