Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3987 ATGGCAGTGCAGGAAGCAAACCCTTCTACTACTCCTAGTCCCCAAGTTGTTGGCAATGCCTTTGTGGAGCAATATTATCACATTCTGCATCAATCCCCTGACTTGGTGCACAGGTTCTATCAGGATTCGAGTCTCTTGAGTAGATCAGACAGCAATGGTGTGATGAAGACTGTCACAACTACACAAGCAATCAATGAAACAATTGTTTCCCTGAATTATGAAGATTGTACAGCAGAAATAAAAACTGCAGATGCTCAGGAGTCCTATGAGAAAGGTGTGATAGTTTTAGTTACTGGATGCTTAACTGGGAAGGATAATGTGAGAAGGAAGTTCTCACAGACATTCTTCTTGGCTCCACAAGATAAAGGATATTATGTCTTAAATGACGTCTTTCGGTACATTGAGGAGAATGATGCCCCACAGTTAAGTTCTGCCTCAATAAATACTGTCATCAATGAAAATGCTGAGGCTGTGCACATACCAGAATCAGAGGACATAAACCCTTCCGAACATCTTGTGGAAGATCCTGCAACCTCCGCAGTGGATGAAAACCCTAATAATGGGGATGAAGTTTATTATCCTATGGACAACAAGGAAGAAGGATTGGTTATTGATGAAGAGGTTGCTGCACCGCCTAACGATCCAAGTGAGAATGATATTGTTACAATTCAAGATCCAACTTCTGCAGTCCAGGATGATGCACGAAAGACATCATATGCGTCAATTGTAATGAAAAGTAACACAGCATCTGGTCGTGTCTATGTTCCCAGCCGAGCTGCAAGAGTGGCGTCTGCTAAATCCAATGAACAACGGCATGCTACCACGAAATCTACTCCTGGGCCTGAGGCATTAGCACCCAGTAGTGACAGTGCACCAAGGACCAGTGACGTTCCTGAAGAAGCTGAAGGTCATTCCATATACATACGGAACTTGCCATTTAATGCAACAATTGAACTTCTTGAAGAGGTTTTTAAGAAATTTGGTCCTATTAAGCATGGTGGAGTCCAAGTAAGAAGCAGTAAGCATGGTTTCTGTTTTGGCTTTGTTGAATATGAGGAATTGAGTTCTGTGCAAAATGCACTTAAGGCTTCACCTATCACTGTTGGTGAGCGGCAAGCTGTTATTGAGGAAAAGATATCGAGCACACGAGTAAGTGATGGCGGAAGAGGGAGGCATCCTTCGGGAAGAGGTGGTTTCCGAGGCGAGGGTTTCCGGGGGCGTGGGAGATTTGGTGGTGGACGAGGTTTTGGAAGAAATGAATTCAGAAACCAAGGGGAGTTCTCAGGACGACCTAGGAGTTCTCACAGGACAAGTCAAAATGGAGGTGGGCGTGGTGGGCGCCATGGTGTGGGGAACCATAATGTTACACCATCTACTCCAGTGTGA 1386 0.4466 MAVQEANPSTTPSPQVVGNAFVEQYYHILHQSPDLVHRFYQDSSLLSRSDSNGVMKTVTTTQAINETIVSLNYEDCTAEIKTADAQESYEKGVIVLVTGCLTGKDNVRRKFSQTFFLAPQDKGYYVLNDVFRYIEENDAPQLSSASINTVINENAEAVHIPESEDINPSEHLVEDPATSAVDENPNNGDEVYYPMDNKEEGLVIDEEVAAPPNDPSENDIVTIQDPTSAVQDDARKTSYASIVMKSNTASGRVYVPSRAARVASAKSNEQRHATTKSTPGPEALAPSSDSAPRTSDVPEEAEGHSIYIRNLPFNATIELLEEVFKKFGPIKHGGVQVRSSKHGFCFGFVEYEELSSVQNALKASPITVGERQAVIEEKISSTRVSDGGRGRHPSGRGGFRGEGFRGRGRFGGGRGFGRNEFRNQGEFSGRPRSSHRTSQNGGGRGGRHGVGNHNVTPSTPV* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3987 461 MobiDBLite consensus disorder prediction 382 398 - -
Mtr4g3987 461 SUPERFAMILY RNA-binding domain, RBD 299 410 IPR035979 GO:0003676
Mtr4g3987 461 Gene3D - 231 383 IPR012677 -
Mtr4g3987 461 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 1 453 IPR039539 -
Mtr4g3987 461 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 304 389 IPR000504 GO:0003723
Mtr4g3987 461 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 306 363 IPR000504 GO:0003723
Mtr4g3987 461 SUPERFAMILY NTF2-like 13 134 IPR032710 -
Mtr4g3987 461 MobiDBLite consensus disorder prediction 209 234 - -
Mtr4g3987 461 MobiDBLite consensus disorder prediction 382 461 - -
Mtr4g3987 461 Pfam Nuclear transport factor 2 (NTF2) domain 17 133 IPR002075 -
Mtr4g3987 461 MobiDBLite consensus disorder prediction 426 441 - -
Mtr4g3987 461 MobiDBLite consensus disorder prediction 263 294 - -
Mtr4g3987 461 MobiDBLite consensus disorder prediction 260 301 - -
Mtr4g3987 461 MobiDBLite consensus disorder prediction 217 234 - -
Mtr4g3987 461 PANTHER RAS GTPASE-ACTIVATING BINDING-LIKE PROTEIN 1 453 - -
Mtr4g3987 461 CDD RRM_SF 306 363 - -
Mtr4g3987 461 CDD NTF2 13 135 IPR018222 -
Mtr4g3987 461 SMART rrm1_1 305 376 IPR000504 GO:0003723
Mtr4g3987 461 ProSiteProfiles Nuclear transport factor 2 domain profile. 17 133 IPR018222 -
Mtr4g3987 461 Gene3D - 7 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3987 Mtr-Chr4 53609431 53615576 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3987 K24983 - gmx:100801253 642.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3987 4 53609431 53615576 Mtr4g3987 4 53609431 53615576 ECH