Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3983 ATGGCAGAAACCCGAAGAACTTCATCATCTTCAACAACCGTTCTCGATAGTTTAGGCGAAGAAATCGTTAGAATTATCACTCCTGTTTCAATCTGCATGTTCCTCGTTGTAATCCTAGTCTCAATTCTCAACACAAACGATTCTCCAACAATCTCCACCATAGCCAACATAGCATACGACGAAACAACATCAGATTCTTCCTGGGACAAATTCCTCGGCGCACTTTTAAACTCTCTCTCCTTCGTTGTTGTCGTAACTTTCGCCACTTTCTTCTTAGTCCTTCTTTTCTATTTCCGATGTATCACGTTCTTAAAACTCTACATGGCTTTTTCTTCCTTTGTTGTATTAGGTTTTCTTGGAGGTGAAATTTCGATTTTTTTGATTCAACATTTTAGTGTTCCGGTTGATTGTATAACGTTTTTGGTTGTTTTGTGTAATTTTGCTGTTGTTGGTGTTTGTGCTGTTTTTATGTCTAAAATGGCTATTTTTGTTACACAAGGGTATTTGGTGGTTATTGGAATATTGGTTGCGTATTGGTTTACTATGTTGCCTGAATGGACAACATGGGCTATGCTTGTTGCTATGGCTTTGTATGATCTTGCTGCGGTTTTGTTGCCTGTTGGTCCTTTGAGGCTTTTAGTTGAACTTGCTATGTCGAGGGATGAAGAAATTCCGGCTTTGGTTTATGAGGCTAGGCCGGTGAGTAATGATTGTATGGATCCTAGGATTATCGAGGCTCGGAGGAGGTTATGGAGAGAGAGAAGGATTGAGAGTGCAATTCTGATAACTGAGAGTGGAAATTCAGTGTTGGGTAGTGGTGGACTTAATGTTGAACAATCATCACATTCCAATTCAGACGCGAATACTGTTCTAAGTACAAATTTAAATGAGAATTTGACTCCTGAAAATGGTTCAAATTTGAATTCTAGTAGCACTTATGGCACACGTAATTTGGTTAGAGCCGAAGAGGGGCGAGCGAGGGTTCAAGAAATTGATTCAGATCTTGCCACACCCTTGATTGATCATGGTGTGAACGTACGGGTTCCTAGAGGAGAAGATGCCACGTCAAATGAGAATTTGATGTTGGAAGGAATTGGGCTGGCTTCGTCCGGTGCAATCAAGTTGGGGCTGGGCGATTTTATCTTCTATAGTGTTTTGGTTGGCAGAGCTGCAATGTATGATTTTATGACAGTGTATGCATGTTATCTTGCAATTATTGCTGGTCTTGGCGTAACTTTGATGCTTTTGGCTTTATATCAGAAAGCGTTGCCTGCTCTACCTGTGTCAGTAGCACTCGGTGTGTTATTTTATTTCTTGACCAGATTGTTACTTGAAGTATTTGTGGTACAATGTTCCTTGAATCTCTTGATGTTCTAA 1377 0.4031 MAETRRTSSSSTTVLDSLGEEIVRIITPVSICMFLVVILVSILNTNDSPTISTIANIAYDETTSDSSWDKFLGALLNSLSFVVVVTFATFFLVLLFYFRCITFLKLYMAFSSFVVLGFLGGEISIFLIQHFSVPVDCITFLVVLCNFAVVGVCAVFMSKMAIFVTQGYLVVIGILVAYWFTMLPEWTTWAMLVAMALYDLAAVLLPVGPLRLLVELAMSRDEEIPALVYEARPVSNDCMDPRIIEARRRLWRERRIESAILITESGNSVLGSGGLNVEQSSHSNSDANTVLSTNLNENLTPENGSNLNSSSTYGTRNLVRAEEGRARVQEIDSDLATPLIDHGVNVRVPRGEDATSNENLMLEGIGLASSGAIKLGLGDFIFYSVLVGRAAMYDFMTVYACYLAIIAGLGVTLMLLALYQKALPALPVSVALGVLFYFLTRLLLEVFVVQCSLNLLMF* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3983 458 PRINTS Presenilin family signature 26 36 IPR001108 GO:0004190|GO:0016021|GO:0016485
Mtr4g3983 458 PRINTS Presenilin family signature 182 189 IPR001108 GO:0004190|GO:0016021|GO:0016485
Mtr4g3983 458 PRINTS Presenilin family signature 199 216 IPR001108 GO:0004190|GO:0016021|GO:0016485
Mtr4g3983 458 PANTHER PRESENILIN 12 458 IPR001108 GO:0004190|GO:0016021|GO:0016485
Mtr4g3983 458 Gene3D Presenilin 356 450 IPR042524 -
Mtr4g3983 458 Pfam Presenilin 19 448 IPR001108 GO:0004190|GO:0016021|GO:0016485
Mtr4g3983 458 PANTHER PRESENILIN 12 458 - -
Mtr4g3983 458 SMART psh_8 72 444 IPR006639 GO:0004190|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3983 Mtr-Chr4 53567322 53569216 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3983 13 458 Miscellaneous Gene Families AT2G29900 59.465 1.83e-158 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3983 K04505 - gmx:100799643 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3983 4 53567322 53569216 Mtr4g3983 4 53567322 53569216 ECH