Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3978 ATGGAGTCAGAAAGCGACGAGACCAGAATCAAAACCAGCAATCAACAACGTCGCGTTGGTTTACTCTACGACGAGAGGATGTGTAAGCACTACGATCCAGACGACGATCGCCATCCCGAAACTCCCAATCGCATTAGGGCTATTTGGGACAAGCTCCAAACCACTGGCATTACTGATCGATGTCTACTTTTGGACGCTAAAGAAGCTGACGACAAACATTTACTAGCGGTCCATACTAAAAATCATGTTAATTTGATTAAGAATATAAGCTATAAGAGTTATAATTCAAGGTCTAATGCTGCTGCCAAACTTAATTCTATATATTTCAACGAAGGTTCAACAAAATCTGCCTATCTTGCTGCTGGCAGTGCTATAGAGGCGGTTAAAAGAGTGGCTAGCAAGGAATTACAATCTGCTGTTGCTATTGTTAGGCCTCCAGGTCATCATTGCGAGCAACATAAAGCTATGGGATTTTGTCTGTTCAACAACGTGGCAGTTGCTGCATCGTATCTCTTAAATGATAGTCCAGAACTTGGTGTAAAGAAAATTTTAATTGTTGACTGGGACGTTCATCATGGAAACGGTACTCAAAAAGTGTTTTGGAATGATTCTCGAGTGTTATTCTTCTCCGTTCACAGGCATGAATTTGGGAGATTTTATCCATGTGGTGATGATGGCTTTTATAACATGACTGGAGAAGGAGATGGTGCTGGATACAATATAAACGTGCCATGGGAGAATGGGAGATGTGGTGATACAGACTATTTTGCAGCGTGGGACCACATCTTGCTCCCTGTTGCCAAAGAATTTAATCCAGACATAATTATAGTTTCTGCTGGATTTGATGCTGCTGTTGGAGACCCTTTGGGTGGATGTTGCATCACACCATTTGGTTATTCCCTTCTGTTGAAAAAGTTGATGAATTTTGCTGAAGGTAGGATTGTACTGGTTTTAGAAGGTGGCTATAATCTTGACTCAATTGCAAAATCAATGCATGCTTGTGTGGAAGTTTTGCTTGAAGACAAGCCTCTTATGGGGTCTTCAGAGGCCTTTCCATTTGAGTCTACATGGCGTGTGATCCAAGCGGTCCGCGAGGAGTTAAGTCCCTTTTGGCCTACACTTGCTTGTGAATTACCACAAAATATAATTTGTCCAGTGGCACCACCTCCGCATACTCTTTTATCAAGCTCCGACTCTGAGACTGAGGATGACAAAGCTCCACCGAAATTAGAAAATGTTGCAGAGCTGCTTGAGGATGTCATCAAACCACTTTCCAACCTCAAAGTTGATGCAGATGAAGATCCTGATGCTTCGTGTTCCTGGCGATCCAAATTGTCAAATGTTTACGTATGGTATGCTTCTTATGGCTCAAATATGTGGAGACCAAGATTTGATTGCTACATAGCTGGTGGACAGGTGGAAGGTATGCAGAAGTTGTGCTCTGGTTCAATGAATAAAACTCTTCCAGATGAGATCTTTTGGAAGACTTTCCCTTGTCATATATTTTACGGTCGTGAATCCTCACATTCATGGGGTCCTGGAGGTGTTGCGTTTCTTAATCCTGAGAAAAATTCTCAGCACAAGACCTACATGTGCATGTACAAAATTTCGCTAGAGCAGTTCAATGATGTTTTATTTTTGGAAAATGGTCTAAGCCTTGATGTAGACTCTGCTTTATTTGATATGGCTACTTTGAATGCCATCTCCAACAAGGAGTTCGGTTCGCAGGAGGTTCTCAAAAATGGTTGGTATGGTAATGCTGTCTACTTAGGAAAGGAGCAAGACATTCCCATAATTACTATGACGTGTCCGCTTCTTGACATTGAGCTCTTCAAATCTGGGGAGCTACCATTGTGTGCGCCTAATAAATCGTACGCCAATACCTTGATAAGAGGGTTGGTAGAGGGAGAACAGCTATCAGAGGCTGAAGCCATTGCTTACATAGACGCTGCTGCTAAATCGTTATGA 1968 0.4223 MESESDETRIKTSNQQRRVGLLYDERMCKHYDPDDDRHPETPNRIRAIWDKLQTTGITDRCLLLDAKEADDKHLLAVHTKNHVNLIKNISYKSYNSRSNAAAKLNSIYFNEGSTKSAYLAAGSAIEAVKRVASKELQSAVAIVRPPGHHCEQHKAMGFCLFNNVAVAASYLLNDSPELGVKKILIVDWDVHHGNGTQKVFWNDSRVLFFSVHRHEFGRFYPCGDDGFYNMTGEGDGAGYNINVPWENGRCGDTDYFAAWDHILLPVAKEFNPDIIIVSAGFDAAVGDPLGGCCITPFGYSLLLKKLMNFAEGRIVLVLEGGYNLDSIAKSMHACVEVLLEDKPLMGSSEAFPFESTWRVIQAVREELSPFWPTLACELPQNIICPVAPPPHTLLSSSDSETEDDKAPPKLENVAELLEDVIKPLSNLKVDADEDPDASCSWRSKLSNVYVWYASYGSNMWRPRFDCYIAGGQVEGMQKLCSGSMNKTLPDEIFWKTFPCHIFYGRESSHSWGPGGVAFLNPEKNSQHKTYMCMYKISLEQFNDVLFLENGLSLDVDSALFDMATLNAISNKEFGSQEVLKNGWYGNAVYLGKEQDIPIITMTCPLLDIELFKSGELPLCAPNKSYANTLIRGLVEGEQLSEAEAIAYIDAAAKSL* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3978 655 PANTHER BNAA09G05590D PROTEIN 16 608 - -
Mtr4g3978 655 Pfam Histone deacetylase domain 38 337 IPR023801 -
Mtr4g3978 655 Gene3D Histone deacetylase domain 11 383 IPR037138 -
Mtr4g3978 655 PRINTS Histone deacetylase superfamily signature 145 168 IPR000286 -
Mtr4g3978 655 PRINTS Histone deacetylase superfamily signature 272 282 IPR000286 -
Mtr4g3978 655 SUPERFAMILY Arginase/deacetylase 16 371 IPR023696 -
Mtr4g3978 655 Gene3D - 437 654 - -
Mtr4g3978 655 PANTHER HISTONE DEACETYLASE 16 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3978 Mtr-Chr4 53539428 53546956 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3978 K11406 - gmx:100788831 1074.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3978 4 53539428 53546956 Mtr4g3978 4 53539428 53546956 ECH
Mtr4g3978 4 53539428 53546956 Mtr3g0913 3 13503672 13505992 PCT