Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3974 ATGAATCCAGAAAAATTTACTCACAAAACAAACGAAGCACTTGCTGGTGCACACGAGCTAGCAATGACTTCAGGCCATGCACAAATCACTCCCTTACACCTTGCATCAATTCTAGTTTCTGATCCTAACGGTATTTTCTTCCAAGCAATTTCAAATGTTGCTGGTGAAGAATCAGCACGTGCCGTTGAACGTGTTTTGAAACAAGCATTAAAGAAACTTCCATCTCAATCTCCTCCACCAGATGAAGTACCTGGTAGCACCGCGCTTATCAAAGCGATTCGTAGAGCACAAGCTGCTCAGAAATCACGTGGTGATACTCATTTAGCTGTTGATCAGTTAATCTTGGGAATTCTTGAGGATTCTCAGATTGGTGATTTGTTTAAAGAAGCTGGTGTTGCTGTTTCTAGGGTTAAAACTGAGGTTGAAAAGCTGAGGGGTAAAGATGGGAAAAAGGTTGAAAGTGCTTCCGGTGATACGAATTTTCAAGCATTGAAGACTTATGGTAGAGATTTGGTTGAACAAGCAGGGAAGCTTGATCCTGTTATTGGACGCGACGAAGAGATTCGAAGAGTTGTGAGGATTTTGTCAAGGAGGACTAAGAATAATCCAGTTCTTATTGGTGAGCCTGGTGTTGGGAAAACTGCTGTTGTTGAAGGGTTGGCTCAGAGGATTGTTAGAGGTGATGTTCCTAGCAATCTTGCTGATGTTAGGTTAATTGCTCTGGATATGGGAGCATTGGTTGCTGGTGCGAAGTATAGGGGAGAATTTGAAGAGAGGTTGAAGGCTGTTTTGAAAGAAGTTGAAGAAGCTGAAGGGAAGGTTATTCTTTTCATTGATGAGATTCATCTTGTTCTTGGAGCTGGTAGAACAGAAGGATCAATGGATGCTGCTAATCTTTTTAAGCCAATGCTTGCTCGTGGACAGCTTCGATGTATTGGTGCTACAACACTTGAGGAGTATAGGAAGTATGTTGAAAAAGATGCAGCATTTGAAAGAAGGTTTCAACAGGTTTATGTGGCTGAACCTAGTGTTCCGGATACGATTAGTATTCTTCGTGGATTAAAAGAGCGATATGAGGGTCATCATGGTGTTCGAATTCAAGATCGCGCGATTGTAGTTGCAGCTCAATTGTCTAGTCGGTACATAACCGGGCGTCATCTACCTGACAAGGCCATTGATTTAGTTGATGAGGCATGTGCTAATGTGAGAGTTCAACTTGATAGTCAACCTGAGGAAATTGACAATCTTGAAAGGAAGAGAATGCAATTAGAAGTTGAACTGCATGCTCTAGAGAAAGAGAAGGACAAAGCTAGCAAAGCCCGTCTTGTAGATGTACGGAGAGAACTTGATGACTTGAGAGACAAGCTTCAACCTCTGAAGATGAAGTATAGTAAAGAGAAAGAGAGGATTGATGAGATTCGAAGGCTGAAGCAGAAACGTGAAGAGCTCCTCTTTGCACTACAGGAGGCAGAGAGGCGGTATGATCTAGCAAGAGCTGCGGACCTGCGATATGGTGCAATTGAAGAGGTGGAAACTGCAATTAAAAATCTTGAAGGTAGCACTGATGGGAACACGGATGAGAACTTAATGTTGACGGAAACAGTTGGACCGGACCAAATAGCCGAGGTTGTTAGCCGATGGACTGGTATACCAGTGACTAGGCTCGGCCAAAATGAGAAAGCAAGGTTGGTTGGACTTGGTGACAGACTGCACACTAGAGTCGTGGGACAAGACCAAGCGGTTAATGCTGTTGCTGAGGCTGTATTGAGATCAAGAGCTGGTTTAGGAAGACCCCAACAACCAACTGGTTCCTTCTTATTCCTTGGTCCGACTGGTGTTGGTAAAACTGAGCTTGCAAAGGCTCTTGCAGAGCAGCTATTTGATGATGAAAATCAGTTGGTGAGAATTGACATGTCGGAATACATGGAACAACACTCTGTATCAAGATTGATTGGTGCACCACCAGGGTATGTTGGACATGAGGAAGGGGGTCAATTAACAGAAGCTGTAAGGAGAAGGCCATACAGTGTTGTACTCTTTGATGAAGTTGAGAAAGCACACACATCTGTATTCAACACTCTTCTCCAAGTCTTGGATGATGGGAGGTTGACTGACGGACAAGGCAGAACTGTGGATTTTAGAAACACTGTGATCATCATGACCTCTAACCTTGGTGCTGAGCATCTCTTGAGTGGACTTTCAGGAAAATGTACCATGCAAGCTGCTCGCGATCGAGTGATGCAGGAAGTAAGAAGGCATTTCAGGCCAGAATTGTTGAACCGACTGGACGAAGTTGTTGTATTTGATCCTCTATCACATGAGCAATTGAGAAAGGTTGCAAGGTTGCAAATGAAGGATGTGGCTAGTCGTCTTGCTGAGAGAGGAATTGCATTGGCAGTAACAGATGCAGCTCTAGATTATATTCTTGCTGAGAGCTATGATCCAGTGTATGGAGCTAGACCAATCAGAAGATGGCTAGAGAAGAAGGTGGTGACAGAACTCTCTAGGATGCTCATAAGAGAAGAAATTGATGAGAATACAACGGTTTACATAGATGCTGGTCCTAAGGGAAGCGATTTGGCATACCGTGTAGAAAAGAATGGAGGGATTGTTAATGCTGAAACTGGGGTGAAGTCTGATATATTGATTCAGATACCGAATGGACCTAAAAGTGATGCTGTTCAGGCTGTCAAGAAAATGAGAATTGAGGAAGTTGACGATGATGAAATGGAAGAGTGA 2739 0.4341 MNPEKFTHKTNEALAGAHELAMTSGHAQITPLHLASILVSDPNGIFFQAISNVAGEESARAVERVLKQALKKLPSQSPPPDEVPGSTALIKAIRRAQAAQKSRGDTHLAVDQLILGILEDSQIGDLFKEAGVAVSRVKTEVEKLRGKDGKKVESASGDTNFQALKTYGRDLVEQAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTISILRGLKERYEGHHGVRIQDRAIVVAAQLSSRYITGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEVELHALEKEKDKASKARLVDVRRELDDLRDKLQPLKMKYSKEKERIDEIRRLKQKREELLFALQEAERRYDLARAADLRYGAIEEVETAIKNLEGSTDGNTDENLMLTETVGPDQIAEVVSRWTGIPVTRLGQNEKARLVGLGDRLHTRVVGQDQAVNAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENQLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHTSVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGLSGKCTMQAARDRVMQEVRRHFRPELLNRLDEVVVFDPLSHEQLRKVARLQMKDVASRLAERGIALAVTDAALDYILAESYDPVYGARPIRRWLEKKVVTELSRMLIREEIDENTTVYIDAGPKGSDLAYRVEKNGGIVNAETGVKSDILIQIPNGPKSDAVQAVKKMRIEEVDDDEMEE* 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3974 912 ProSitePatterns Chaperonins clpA/B signature 1. 295 307 IPR018368 GO:0005524
Mtr4g3974 912 SMART ClpB_D2_small_2 771 862 IPR019489 -
Mtr4g3974 912 CDD AAA 575 770 - -
Mtr4g3974 912 SUPERFAMILY Double Clp-N motif 4 157 IPR036628 -
Mtr4g3974 912 Coils Coil 473 500 - -
Mtr4g3974 912 PANTHER ATP-DEPENDENT CLP PROTEASE 4 865 - -
Mtr4g3974 912 Pfam AAA lid domain 344 443 IPR041546 -
Mtr4g3974 912 CDD AAA 182 337 - -
Mtr4g3974 912 Pfam AAA domain (Cdc48 subfamily) 601 765 IPR003959 GO:0005524|GO:0016887
Mtr4g3974 912 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 550 856 IPR027417 -
Mtr4g3974 912 SMART AAA_5 199 344 IPR003593 -
Mtr4g3974 912 SMART AAA_5 601 772 IPR003593 -
Mtr4g3974 912 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 605 623 IPR001270 GO:0005524
Mtr4g3974 912 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 650 668 IPR001270 GO:0005524
Mtr4g3974 912 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 679 697 IPR001270 GO:0005524
Mtr4g3974 912 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 712 726 IPR001270 GO:0005524
Mtr4g3974 912 Coils Coil 442 469 - -
Mtr4g3974 912 Gene3D - 3 148 IPR036628 -
Mtr4g3974 912 Pfam ATPase family associated with various cellular activities (AAA) 204 317 IPR003959 GO:0005524|GO:0016887
Mtr4g3974 912 Gene3D - 771 866 - -
Mtr4g3974 912 Gene3D - 150 343 IPR027417 -
Mtr4g3974 912 Gene3D - 554 770 IPR027417 -
Mtr4g3974 912 Pfam Clp amino terminal domain, pathogenicity island component 96 146 IPR004176 -
Mtr4g3974 912 Pfam Clp amino terminal domain, pathogenicity island component 17 55 IPR004176 -
Mtr4g3974 912 Gene3D - 344 548 IPR027417 -
Mtr4g3974 912 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 549 IPR027417 -
Mtr4g3974 912 Coils Coil 253 273 - -
Mtr4g3974 912 ProSitePatterns Chaperonins clpA/B signature 2. 635 653 IPR028299 -
Mtr4g3974 912 Coils Coil 406 440 - -
Mtr4g3974 912 Pfam C-terminal, D2-small domain, of ClpB protein 771 851 IPR019489 -
Mtr4g3974 912 ProSiteProfiles Clp repeat (R) domain profile. 3 147 IPR004176 -
Mtr4g3974 912 PANTHER CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC 4 865 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3974 Mtr-Chr4 53505071 53508882 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3974 K03695 - gmx:732632 1618.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3974 4 53505071 53508882 Mtr4g3974 4 53505071 53508882 ECH