Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3943 ATGGGTTCTCTTCCTCTCAGCGATGACCGATCAGAAATTGTATTCTTCGACGTAGAAACCACCGTTCCGACCCGACCAGGTCAGGGTTTTGCCATTTTGGAATTCGGAGCCATTCTGGTTTGTCCAAGGAAGTTGACGGAGCTTCGAAACTACTCAACTTTGGTCCGACCCTCCGAACTTTCACTCATCACTCCGTTATCGGAGCGATGTAACGGAATCAACGCTGAAGCTGTTTCCAACGCTCCTACCTTTGTTGATATTGCTCACTCTGTTTATGACCTTCTCCATGGGAGGATTTGGGCGGGTCATAATATTATTAGATTTGATTGTGTTCGGATTAGAGATGCTTTTGCTGCTATTAAACAGCCACCGCCTGAACCCAAGGGTTTGATTGACTCTTTGGTTTTGTTGACTCAAAAGTTTGGAAGAAGAGCTGGTAACATGAAGATGGCTACTCTTGCTACCTATTTTGGTCTTGGGCAGCAGACACACAGGAGCTTAGATGATGTTCGGATGAATCTTGAAGTCCTCAAATACTGTGCAACAGTTCTATTCTTGGAGTCAAGTCTCCCAGATATATTCACTGAAAATTGTTGGGTTTCACCAAATGCTGTTACAAGAAGTCGCAGTAATGGGAAATCACGGCCAGAAGGGGGTTTGTTGGTATCATCTCCTGAAACTGAAACTCAAGATAAAAATCATCCAATCCTTTCTCTTGCAACAAGCAGCACAGAAATCGCTGTTTCAAATGCTGCAGATACCTTTAGCTTCCGTGAGCTTCAGAACGAAATTAATAGAGAATCCATTAGGACAGATGTAGCCATGGATGACAAATCCATACAATATTCACCTGGTTCAGCAGCCTCATCTTCTGTGCATCAGGCTGGCAGCAGCTCTATTGCTGTTTTAGAGCCCGATTTTTTATCAATATCTTCTATTGATGCATCTCTTGTTCCATCTTATTATGGCAGTCAAAGGATAGAATTACATCATGAAGGTTTCCCATTTCAGCTTCATTGTTCTGGTTTGAAAGTGCGGTTTGGAATAAACACAAAGTTTGTTGATAGTGCTGGCCGGCCACGGTTAAACTTTGTGGTTGATCCATCACCAAGTTTATGTAATGTTCTTGATGCATGTGACAATGTTGCACGTAAGTTATCCTCGGAATCTGGTAGCAGCTCTGATTGGAGGCCAGTTGTTATTAGGAAAGAGGGCTTCTTCAACTATCCTACTATCAGATTGCATATACCTACAGCAGTGTGCGAAGAGATTGCCATTTACGCAACAGAAATATATCAAAAAGAATCATCTGGATCTGTGCAAAGGCTTCTCTTCAGCAAGTTTGATGCTGCAGAACTTGATTCCTTGTTCAAGCCTGGGACGTTTGTTGATGCAGCCTTCTCCTTAGATCTGTATGACTATCATCAGAATGCAGGGATTAAATTGGTTGCCAAGAAATTAACCATTCATTGCAACTAG 1479 0.4253 MGSLPLSDDRSEIVFFDVETTVPTRPGQGFAILEFGAILVCPRKLTELRNYSTLVRPSELSLITPLSERCNGINAEAVSNAPTFVDIAHSVYDLLHGRIWAGHNIIRFDCVRIRDAFAAIKQPPPEPKGLIDSLVLLTQKFGRRAGNMKMATLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSLPDIFTENCWVSPNAVTRSRSNGKSRPEGGLLVSSPETETQDKNHPILSLATSSTEIAVSNAADTFSFRELQNEINRESIRTDVAMDDKSIQYSPGSAASSSVHQAGSSSIAVLEPDFLSISSIDASLVPSYYGSQRIELHHEGFPFQLHCSGLKVRFGINTKFVDSAGRPRLNFVVDPSPSLCNVLDACDNVARKLSSESGSSSDWRPVVIRKEGFFNYPTIRLHIPTAVCEEIAIYATEIYQKESSGSVQRLLFSKFDAAELDSLFKPGTFVDAAFSLDLYDYHQNAGIKLVAKKLTIHCN* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3943 492 MobiDBLite consensus disorder prediction 205 232 - -
Mtr4g3943 492 Pfam Exonuclease 14 177 IPR013520 -
Mtr4g3943 492 PANTHER DNA POLYMERASE III SUBUNIT EPSILON 6 491 - -
Mtr4g3943 492 CDD DEDDh 14 178 - -
Mtr4g3943 492 PANTHER PROTEIN NEN3 6 491 - -
Mtr4g3943 492 SMART exoiiiendus 12 186 IPR013520 -
Mtr4g3943 492 Gene3D - 5 183 IPR036397 GO:0003676
Mtr4g3943 492 SUPERFAMILY Ribonuclease H-like 11 182 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3943 Mtr-Chr4 53197421 53200592 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3943 - - ccaj:109808157 754.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3943 4 53197421 53200592 Mtr4g3943 4 53197421 53200592 ECH