Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3939 ATGGCTTCAACTACAACTTCTCTATGTTCCTCTACCCTCCAATCTCAGATCAATGGACTTTCCCTTCACAAGAATTCTCTCTTCCATCCCCGTTCTCTCACTTTCTCCAGGAGGAAAATTTCAACTGTGGTTAAGGCTTCATCTCGTGTTGACAAGTTTTCAAAAAGCGATATCATTGTTTCTCCATCTATTCTTTCTGCCAACTTTGCAAAATTGGGAGAACAGGTAAAAGCAGTAGAGTTGGCTGGTTGTGATTGGATTCATGTTGATGTTATGGATGGTCGCTTTGTCCCAAATATTACTATTGGACCTCTTGTGGTTGATGCATTGCGCCCTGTGACAGATTTACCTTTGGATGTCCACCTGATGATTGTAGAACCAGATCAGCGGGTGCCCGATTTCATCAAAGCAGGAGCTGACATTGTCAGTATTCATTGTGAACAATCTTCCACTATCCATTTGCATCGTGCAATTAATCAAGTAAAAAGCCTGGGAGCTAAAGCTGGAGTTGTCCTAAACCCTGGTACTCCGCTAAGTGCAATAGAATATGTCCTTGATGTGGTTGACTTGGTCTTAATTATGTCTGTAAACCCTGGCTTTGGTGGCCAGAGTTTTATTGAGAGCCAAGTAAAGAAAATTTCTGATTTGAGAAGATTGTGCGTGGAGAAGGGTGTGAATCCTTGGATTGAAGTGGATGGTGGGGTTACCCCAGCAAATGCTTACAAGGTGATTGAGGCTGGAGCTAATGCACTGGTTGCTGGTTCTGCTGTGTTTGGAGCTAAAGACTATGCTGAAGCTATAAAAGGAATTAAAGCTAGCAAAAGACCTGAGCCAGTTTCTGTGTGA 846 0.4279 MASTTTSLCSSTLQSQINGLSLHKNSLFHPRSLTFSRRKISTVVKASSRVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPDQRVPDFIKAGADIVSIHCEQSSTIHLHRAINQVKSLGAKAGVVLNPGTPLSAIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCVEKGVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKASKRPEPVSV* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3939 281 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 191 213 IPR000056 GO:0005975|GO:0016857
Mtr4g3939 281 Hamap Ribulose-phosphate 3-epimerase [rpe]. 57 273 IPR026019 GO:0004750|GO:0006098
Mtr4g3939 281 SUPERFAMILY Ribulose-phoshate binding barrel 52 274 IPR011060 -
Mtr4g3939 281 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 17 271 IPR000056 GO:0005975|GO:0016857
Mtr4g3939 281 PANTHER - 17 271 - -
Mtr4g3939 281 TIGRFAM rpe: ribulose-phosphate 3-epimerase 60 271 IPR026019 GO:0004750|GO:0006098
Mtr4g3939 281 CDD RPE 59 271 IPR000056 GO:0005975|GO:0016857
Mtr4g3939 281 Pfam Ribulose-phosphate 3 epimerase family 60 258 IPR000056 GO:0005975|GO:0016857
Mtr4g3939 281 Gene3D Aldolase class I 48 277 IPR013785 -
Mtr4g3939 281 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 1. 87 101 IPR000056 GO:0005975|GO:0016857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3939 Mtr-Chr4 53157851 53161991 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3939 K01783 - gmx:100786514 506.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3939 4 53157851 53161991 Mtr4g3939 4 53157851 53161991 ECH