Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3925 ATGAACATAATTAACAAGAGTTGCGAAGAAATATTACTTTCACTGTTGAGCAATTGCAACACAACCCTCAAAACCACGAAACAAATCCACACTCATCTCTACGTTACAGGCCTTCACACTCACCCTTTCTTCTTCGGCAAACTCCTTCTCAACTGCGCCGTTTCCATCTCCGATCATGTTCTCAACTACTCTCTCCGTCTCTTCCATCACTTCCCCAACCCCGACACCTTCATGTACAACACCCTCATTCGTTCCCTCTCTCATTCCTCCACCCCTCTCTCTTCCCTCCAACCCTTCATTCAATTACTTCGCCACCCCACTCTTCTCCCTGATAGTTTCTCTTTCGCCTTCACACTTAAAGGCATTGCGAACGATGGTTGTTCTAAGAGACAGGGGATTCAGCTGCATTCTCATGCTTTTCGTCATGGTTTTGATGATCATATATTTGTTGGAACCACTTTGATTAGTATGTATGCTGAATGTGGGTGTTATGAATATGCGAGAAAGGTGTTTGATGAAATGTCTCAACCGAATGTTGTAGCATGGAATGCGGTTGTTACTGCTTGTTTTAGGTGTGGGGATGTGGAGGGTGCTTGGGGTTTGTTTGAAAGGATGCCGGTTAGGAATTTGACTTCTTGGAATACGATGCTTGCGGGTTATGTTAAAGCAGGTCAGCTTTGGTTGGCGAGAAGAGTTTTTTGTGAAATGAAGATGAGAGATGATGCTTCTTGGAGTACTATGATTGTTGGGTTTGCTAAAAGTGGTTCTTTTCATGATGCGTTTGGGTTTTTTAAGGAGTTGTTGCGGGACAGAAATAGGCCGAGTGAGGTTAGTCTTACTGGGGTGTTATCCGCATGTGCACAGGCTGGGGCATTTGAGTTTGGGAAGATTTTACATGGGTTTATGGAAAAAGCGGGGTTTCTTTGTATTGTTTCAGTTAACAATGCTCTCATTGATACTTACTCGAAGTGTGGAAATGTTGATATGGCTAAGTTGGTCTTTCAACATATGTCTGCGGAAAAGTGCATTGTGTCTTGGACGTCGATGATAGCAGCACTTGCAATGCATGGTCGTGCAGATGAGGCGATCCGGGTGTTTCATGAGATGGAAGAGTCTGGAGTTAGGCCAGATGGTGTCACCTTCATATCTCTCTTGTATGCCTGTAGTCATAGTGGTTTGGTTGAGCAAGGTTGTGCTTTGTTTTCTAAGATGAGAAATTTTTATGGAATTGAACCCGCCATCGAGCATTATGGCTGTATGGTTGATCTGTATGGTCGGGCTGCTAGGTTGCAGAAAGCTTATGAGTTTATACGTCAGATGCCAATTTTACCTAACGTAATCATTTGGAGAACCCTCCTTGGAGCTTGTAGCATTCATGGTAATATTGAATTGGCAGAGCTTGTGAAAGCAAGGCTTGCTGAAATGGATCCAAACAACTCCGGTGACCATGTACTGCTCTCAAATGTTTACGCGGTTGCAGGGAAATGGAAGGATGTTGCTGGCATAAGAAGAACAATGATTGAACAGAGCATGAAAAAAATTCCTGGTTGGAGCATGATTGAAATTGACAAGGTCAATTATGGTTTTGTGGCAGGTGAAAAGCCTAATGAGGTTACAAAAGAGGCCCATGATAAACTAAGGGAAATAATGTTGAGGCTTAGAGAAGAAGAAGGTTACGCGCCCCAGGTAAGGAGTGTCCTGCATGATGTTGAAGAGGAAGAAAAAGAAGATTCTATGTCCAAGCACAGTGAAAAGCTTGCTGCAGCTTTTGGAATTGCAAAGCTTCCTAAAGGAAGGATTTTAAGAATAGTGAAGAACCTGAGGGTTTGTGGGGACTGCCATACTGTGATGAAGCTGATTTCTAAAGTCTATCAAGTAGAAATCATTGTGAGAGATAGAAGTCGCTTTCACTCATTCAAAGGTGGATTTTGTTCCTGCAGAGATTACTGGTGA 1953 0.4306 MNIINKSCEEILLSLLSNCNTTLKTTKQIHTHLYVTGLHTHPFFFGKLLLNCAVSISDHVLNYSLRLFHHFPNPDTFMYNTLIRSLSHSSTPLSSLQPFIQLLRHPTLLPDSFSFAFTLKGIANDGCSKRQGIQLHSHAFRHGFDDHIFVGTTLISMYAECGCYEYARKVFDEMSQPNVVAWNAVVTACFRCGDVEGAWGLFERMPVRNLTSWNTMLAGYVKAGQLWLARRVFCEMKMRDDASWSTMIVGFAKSGSFHDAFGFFKELLRDRNRPSEVSLTGVLSACAQAGAFEFGKILHGFMEKAGFLCIVSVNNALIDTYSKCGNVDMAKLVFQHMSAEKCIVSWTSMIAALAMHGRADEAIRVFHEMEESGVRPDGVTFISLLYACSHSGLVEQGCALFSKMRNFYGIEPAIEHYGCMVDLYGRAARLQKAYEFIRQMPILPNVIIWRTLLGACSIHGNIELAELVKARLAEMDPNNSGDHVLLSNVYAVAGKWKDVAGIRRTMIEQSMKKIPGWSMIEIDKVNYGFVAGEKPNEVTKEAHDKLREIMLRLREEEGYAPQVRSVLHDVEEEEKEDSMSKHSEKLAAAFGIAKLPKGRILRIVKNLRVCGDCHTVMKLISKVYQVEIIVRDRSRFHSFKGGFCSCRDYW* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3925 650 Coils Coil 536 556 - -
Mtr4g3925 650 PANTHER - 16 591 - -
Mtr4g3925 650 Pfam PPR repeat 152 175 IPR002885 -
Mtr4g3925 650 Pfam PPR repeat 416 440 IPR002885 -
Mtr4g3925 650 Pfam PPR repeat 243 270 IPR002885 -
Mtr4g3925 650 Pfam PPR repeat 212 239 IPR002885 -
Mtr4g3925 650 Pfam PPR repeat 180 209 IPR002885 -
Mtr4g3925 650 Gene3D Tetratricopeptide repeat domain 407 587 IPR011990 GO:0005515
Mtr4g3925 650 Pfam PPR repeat family 341 389 IPR002885 -
Mtr4g3925 650 PANTHER OS01G0913400 PROTEIN-RELATED 16 591 - -
Mtr4g3925 650 Pfam E motif 459 521 IPR046848 -
Mtr4g3925 650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 212 IPR002885 -
Mtr4g3925 650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Mtr4g3925 650 TIGRFAM PPR: pentatricopeptide repeat domain 344 377 IPR002885 -
Mtr4g3925 650 TIGRFAM PPR: pentatricopeptide repeat domain 180 209 IPR002885 -
Mtr4g3925 650 TIGRFAM PPR: pentatricopeptide repeat domain 152 175 IPR002885 -
Mtr4g3925 650 TIGRFAM PPR: pentatricopeptide repeat domain 315 343 IPR002885 -
Mtr4g3925 650 TIGRFAM PPR: pentatricopeptide repeat domain 212 239 IPR002885 -
Mtr4g3925 650 TIGRFAM PPR: pentatricopeptide repeat domain 243 275 IPR002885 -
Mtr4g3925 650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 240 274 IPR002885 -
Mtr4g3925 650 Pfam DYW family of nucleic acid deaminases 558 650 IPR032867 GO:0008270
Mtr4g3925 650 Gene3D Tetratricopeptide repeat domain 93 240 IPR011990 GO:0005515
Mtr4g3925 650 Gene3D Tetratricopeptide repeat domain 244 406 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3925 Mtr-Chr4 52987270 52990486 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3925 132 650 Glycoside Hydrolase AT3G49170 36.861 3.84e-115 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3925 - - lja:Lj4g3v1632020.2 1043.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3925 4 52987270 52990486 Mtr4g3925 4 52987270 52990486 ECH