Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mtr4g3850 | ATGGGTTCCGATTCAATCGCCGCCGTTCCGATTCCTTCCGCCGCTAACACCAAGAACCCTGGCAAAAAGAAGAGGACCAATAGGTCGGCGAAATTGAAGCAGTATAAGATTGATGCTCGTCGTGAACAATGGCTATCTCAAGGTGCAGTAAAGAAGAAGGGTTGCAAGGATGGATTGGACGATGATGTCCACGTGTCGTCGTCACCGGTGGGGAAACAGAGCAAACGTGAAATGGAGAAAGTGGGGACGAGGCGTAGAGGTGGAGAGGATGACGTGTTGATTCATCAAGACAGTGATTCGGAGTCGCCGTCAAACAGTCCTATCAGTCCTAATAGTAGTGTGTTGTGTGGTAATGATTCCGGGACGAATTTCACTGGTAGTAGCAGTGGTGCAAGCAGTAGCAGTAGTAGTTCTAGTAGTGGTGGGTGTTTCTCCGGGAATATTACGGAAGAGGAAGAAGATGATGAAGAAGAAGTAGAACAAGAGGAGGAGGTAGATGATGGATGCTTGGATGATTGGGAGGCTGTGGCAGATGCTTTAGCCGCCGATGAGAAGCATAGAGCCTCTCCACAGGATGAACCCGTTGTGGAAACGGATTCATCTTGTGAAGTGACTGATGGTTTGAGTTCAGGATGTTTGGATTCCAAACCGGGGAGTGGTGGAACGGTTCCTCGGGCTTCCGGTAATGGCAAAGCTTGGAGGGCTGATGATGCTTTTCGCCCTCAGACTTTGCCCAATCTGTCGAAGCAGCATAGTATGCCGAATCCACGTTTTGTAGGAGGGGTTCCCTGGTCTTGCATGTCTGTGCCATCCAATTGTCCAATTTGCTGTGAGGATCTCGATTTAACGGACACGAGTTTTCTTCCATGCAATTGTGGTTTTCGGCTTTGTCTCTTTTGCCACAAGAGGATTCTTGAGCAGGATGCTCGTTGTCCTGGGTGCAGGAAGCAATATGAGTGTGAACCTATTGAGACAGAAGCAAGTGTGCATGGAGGTAGCCTTACTCTTCGGTTGGCTCGTTCTGTTAGCATGATCGAAAGGTCTTGA | 1047 | 0.49 | MGSDSIAAVPIPSAANTKNPGKKKRTNRSAKLKQYKIDARREQWLSQGAVKKKGCKDGLDDDVHVSSSPVGKQSKREMEKVGTRRRGGEDDVLIHQDSDSESPSNSPISPNSSVLCGNDSGTNFTGSSSGASSSSSSSSSGGCFSGNITEEEEDDEEEVEQEEEVDDGCLDDWEAVADALAADEKHRASPQDEPVVETDSSCEVTDGLSSGCLDSKPGSGGTVPRASGNGKAWRADDAFRPQTLPNLSKQHSMPNPRFVGGVPWSCMSVPSNCPICCEDLDLTDTSFLPCNCGFRLCLFCHKRILEQDARCPGCRKQYECEPIETEASVHGGSLTLRLARSVSMIERS* | 349 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mtr4g3850 | 348 | MobiDBLite | consensus disorder prediction | 73 | 97 | - | - | |
| Mtr4g3850 | 348 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 267 | 330 | IPR013083 | - | |
| Mtr4g3850 | 348 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
| Mtr4g3850 | 348 | PANTHER | CCR4-NOT TRANSCRIPTION COMPLEX RELATED | 16 | 346 | IPR039780 | GO:0004842|GO:0030014 | |
| Mtr4g3850 | 348 | MobiDBLite | consensus disorder prediction | 148 | 169 | - | - | |
| Mtr4g3850 | 348 | ProSiteProfiles | Zinc finger RING-type profile. | 273 | 315 | IPR001841 | - | |
| Mtr4g3850 | 348 | MobiDBLite | consensus disorder prediction | 194 | 208 | - | - | |
| Mtr4g3850 | 348 | CDD | mRING-HC-C4C4_CNOT4 | 273 | 316 | IPR039515 | - | |
| Mtr4g3850 | 348 | Pfam | RING/Ubox like zinc-binding domain | 273 | 319 | - | - | |
| Mtr4g3850 | 348 | SUPERFAMILY | RING/U-box | 271 | 324 | - | - | |
| Mtr4g3850 | 348 | MobiDBLite | consensus disorder prediction | 98 | 146 | - | - | |
| Mtr4g3850 | 348 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 16 | 346 | - | - | |
| Mtr4g3850 | 348 | MobiDBLite | consensus disorder prediction | 48 | 169 | - | - | |
| Mtr4g3850 | 348 | MobiDBLite | consensus disorder prediction | 183 | 235 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mtr4g3850 | Mtr-Chr4 | 52200835 | 52202494 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mtr4g3850 | - | - | var:108330419 | 443.351 |
Event-related genes