Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3840 ATGATTCCTCGTCGCTACTTTTTGACATGTCTCCTTATCTTTCTTCTCGTACTTTCCACCTTCTCCTTCTCTCACTCTCAACCCCATTGGTCTTCCAAGAAAAAACGCCTCGGAGAAAAAGTTCGCAATATGTTTCACCATGCCTATGACAACTATATGACTCATGCATTTCCGCACGATGAGCTAAAACCTCTCACGAAAACTTTCACCGATTCCCTAAGCGAGCTGGGAAATTTGAAGCTTGAACGTTTGCCGCAAGACTACAATGGTTCTGCCCTTTCGCTAATTGAATCACTGTCTAGCCTTGTGATTATGGGCAACAATACCGAATTCGAGAAGGGAGTACGCTGGCTTTCAGAAAATCTAAAATTTGACGTTGATGCTCGCATTAATCTTTTTGAGTGCAACATTAGAGTTCTTGGAGGACTTGTCTCTGCTCATTTACTGGCATCTGATTCTTCAAAGAAGTTGCTACAAGGATCTTACAAGAATGAGCTACTAGGCCTGGCTGAAGATTTAGGGAAACGTTTTCTACCAGCGTTCAATACGCCTACTGGATTACCATATGCATGGATTAACTTGAAGTATGGAGTAATGGAGAATGAGACTACAGAAACAAGCACTTCAGGGTGTGGTTCGTTGATTCTTGAAATGGGTGCTTTATCAAAACTGACTGGTGACCCCATATATGAATCAGTAGCTTTACGAGCTCTCCGTAAGCTATGGAGTATGCAGAGCTTATTAAAATTATTTGGAACCACACTTGACGTGTCAACTGGGCAATGGATTGAACATTCTTCAGGAATTGGAGCTGGTGTAGATTCCTTCTATGAATATCTACTTAAAGCTCATATCCTTTTCGGAAAGGAGGACTATTGGAGAATGTTTCATTCTGCTTATGTTGCAGTGCAGAAGCATTTCAGACACGGTCCCTGGTACCACGAAGCTGATATGAGGACAGGAAGAGCAACTTATTGGCAGCTTACAAGTCTTCAAGCATTTTGGCCTGGCCTACAGGTTCTTATTGGGGATATATCTGCTGCTAATTCATCTCACCGTGAGTTCTTCTATGTGTGGAAGAAATTTGGAGTGCTGCCAGAGAGGTATTTGCTGGACCATCAGATGCTTCATCCTACTGAAAAATATTATCCGTTACGCCCTGAGTTTGCTGAGTCAACATTCTACTTATATCAAGCTACTAAAGATCCATGGTATATTGAAGTTGGCGAATTAATAGTCAATTCCCTTAATTTACACACAAGAGTAGAAGGTGGGTTTGCAAGCATCAAGGATGTGACAACTATGCAGTTAGAAGATCATCAACATAGTTTTTTTCTTGCTGAAACGTGTAAATATTTGTATCTTCTCTTTGATGATTCATTTATGGTCGACAGTAATTACGTATTTACCACTGAAGGTCATCCCCTTCCAGTACTAAGCACTTGGCATGAAGAGCTTCCACAAACATACATTCCAACTAATTGGACAACTCTGAAGAGACAACCAGCAAATCGAGCCAGTGCAATGTCATTGCAAGTATGTCCTGCTATGACTTTAAATTCAGGTCAACATATAGAGAGTGCTTGCCACATCTCCGATGTTCGTAGTGATCATAGGTGTTTGACTGATAACGATTGTGGAGTTGATGCAACTACCTGTAGAAGAAGATCATGTAGCATGGCTGGTTATTGTGGACTATGGCTCTTCATTTGA 1713 0.4121 MIPRRYFLTCLLIFLLVLSTFSFSHSQPHWSSKKKRLGEKVRNMFHHAYDNYMTHAFPHDELKPLTKTFTDSLSELGNLKLERLPQDYNGSALSLIESLSSLVIMGNNTEFEKGVRWLSENLKFDVDARINLFECNIRVLGGLVSAHLLASDSSKKLLQGSYKNELLGLAEDLGKRFLPAFNTPTGLPYAWINLKYGVMENETTETSTSGCGSLILEMGALSKLTGDPIYESVALRALRKLWSMQSLLKLFGTTLDVSTGQWIEHSSGIGAGVDSFYEYLLKAHILFGKEDYWRMFHSAYVAVQKHFRHGPWYHEADMRTGRATYWQLTSLQAFWPGLQVLIGDISAANSSHREFFYVWKKFGVLPERYLLDHQMLHPTEKYYPLRPEFAESTFYLYQATKDPWYIEVGELIVNSLNLHTRVEGGFASIKDVTTMQLEDHQHSFFLAETCKYLYLLFDDSFMVDSNYVFTTEGHPLPVLSTWHEELPQTYIPTNWTTLKRQPANRASAMSLQVCPAMTLNSGQHIESACHISDVRSDHRCLTDNDCGVDATTCRRRSCSMAGYCGLWLFI* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3840 570 PANTHER ALPHA-MANNOSIDASE I MNS5 16 569 - -
Mtr4g3840 570 Pfam Glycosyl hydrolase family 47 44 477 IPR001382 GO:0004571|GO:0005509|GO:0016020
Mtr4g3840 570 Gene3D - 27 488 IPR012341 GO:0005975
Mtr4g3840 570 PRINTS Glycosyl hydrolase family 47 signature 44 64 IPR001382 GO:0004571|GO:0005509|GO:0016020
Mtr4g3840 570 PRINTS Glycosyl hydrolase family 47 signature 129 147 IPR001382 GO:0004571|GO:0005509|GO:0016020
Mtr4g3840 570 PRINTS Glycosyl hydrolase family 47 signature 179 198 IPR001382 GO:0004571|GO:0005509|GO:0016020
Mtr4g3840 570 PRINTS Glycosyl hydrolase family 47 signature 270 287 IPR001382 GO:0004571|GO:0005509|GO:0016020
Mtr4g3840 570 PRINTS Glycosyl hydrolase family 47 signature 327 343 IPR001382 GO:0004571|GO:0005509|GO:0016020
Mtr4g3840 570 PRINTS Glycosyl hydrolase family 47 signature 384 408 IPR001382 GO:0004571|GO:0005509|GO:0016020
Mtr4g3840 570 PRINTS Glycosyl hydrolase family 47 signature 443 463 IPR001382 GO:0004571|GO:0005509|GO:0016020
Mtr4g3840 570 SUPERFAMILY Seven-hairpin glycosidases 37 491 IPR036026 GO:0004571|GO:0005509|GO:0016020
Mtr4g3840 570 PANTHER ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2 16 569 IPR044674 GO:0004571|GO:1904380|GO:1904382
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3840 Mtr-Chr4 52084786 52090050 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3840 3 567 Glycoside Hydrolase AT1G27520 75.747 0.0 901
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3840 K10084 - gmx:100793674 1021.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3840 4 52084786 52090050 Mtr4g3840 4 52084786 52090050 ECH