Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3834 ATGGGTGACAATAAACGCAAAAGAGGTCGCAAACCCAAAACCCCCGAAACCCTAGAAACCACCGCCACCACCACCACCACCACCACTGCTACCACCACCGTCGCAGACAACCCTTCCACTATTATCGACGACGACTTCTCCGTCGGAAACGTTGAACTCATCGACAACGGCCCCCCTTCTCAACTCGGCCGTGGCCGTCGTGGCCGACCCAAGAAGCACCCCGCTATTCCCGAGAAGCCACCCGCAGGCCGCCGCCTTACCCGCTCTGACAGCAACGGTGCCGTCCCGGCGGTCCCGCCTCCGGTTGAAGCTGGGGGTGCTACACCAATGGATGCGGACCCTATATGGGAGAGATTGTCGACGAGGGTGTTGCCTTCGATGGATTCGGTGGTGAAAGTGTTCTGTGTTCATACAGAACCGAACTTTTCGCTTCCATGGCAGAGGAAGAGACAGTATAGCTCTAGTAGTACTGGGTTTGTGATAAGTGGGAAGAGGGTTCTCACCAATGCACATTCTGTGGAGCATTATACTCAGGTTAAGCTCAAGAAACGTGGTTCTGATACTAAGTATTTGGCCACCGTTCTTGCCATTGGAACTGAGTGTGACATTGCCATGCTTACTGTTGACGACGATGAGTTCTGGCAAGGGATGTCGCCTGTGGATTTTGGGGAGTTGCCTACCCTTCAAGATGCAGTAACTGTTGTGGGCTACCCAATTGGTGGAGACACTATCTCTGTGACCAGTGGTGTTGTATCACGTATTGAGATTTTATCTTATGTCCATGGTTCCACAGAGCTTCTAGGTTTACAGATAGATGCTGCTATAAATTCTGGAAATTCTGGCGGACCTGCATTTAATGGTAAAGGAACCTGTGTGGGGATAGCATTTCAGTCCCTCAAACATGAAGATGTGGAGAATATAGGTTATGTCATTCCAACGCCAGTTATCATGCATTTCATCCAGGATTATGAGAAGAATGGAGGATATACTGGATTCCCTATTCTTGGGGTTGAGTGGCAGAAAATGGAAAATCCTGATCTACGAATGGCAATGGGCATGAAATCTGATCAGAAAGGTGTGCGCATTAGAAGAATCGATCCTACTTCTCCTGAATCTAATGTTTTGAAACCGTCAGATGTTATTCTTAGCTTTGATGGGGTTGATATTGCCAATGATGGAACAGTTCCATTTCGCCATGGAGAGCGCATTGGTTTCAGTTATCTCATATCACAGAAATATACTGGCGATGATGCAGCAATCAAAGTATTGCGGAGTTCAAATGTTCTCAAATTCAATATTAAACTTGATGGTCATAGAAGGCTTATTCCAGCACACAGCAAGGGCAAGCCTCCCTCATATTATATCATTGCAGGATTTGTTTTTTCAACGGTTTCGGTTCCTTATCTTCGTTCTGAGTACGGGAAGGACTATGAATATGAAGCTCCAGTCAAGATTTTGGATAAACTGCTGTATGCAATGCCACAATCACCAGATGAACAACTTGTTGTGATTTCTCAGGTGCTGGTGGCTGATATTAACATCGGATATGAAGAGATCGTTAACACCCAGGTCGTTGGTTTTAATGGTAAACCTGTAAAAAATCTTAAGAGCTTGGCCGCAATGGTAGAGAGCTGTGATGACGAGTATCTGAAATTTGATTTAGATTATGAGCAGATAGTGGTTCTTCGCACGAAAACTGCAAAAGCTGCCACGCTAGATATTCTTGCAACACACTGCATTCCATCAGCAATGTCTGACGATCTCAAGTCATAG 1773 0.4625 MGDNKRKRGRKPKTPETLETTATTTTTTTATTTVADNPSTIIDDDFSVGNVELIDNGPPSQLGRGRRGRPKKHPAIPEKPPAGRRLTRSDSNGAVPAVPPPVEAGGATPMDADPIWERLSTRVLPSMDSVVKVFCVHTEPNFSLPWQRKRQYSSSSTGFVISGKRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVDDDEFWQGMSPVDFGELPTLQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNGKGTCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYEKNGGYTGFPILGVEWQKMENPDLRMAMGMKSDQKGVRIRRIDPTSPESNVLKPSDVILSFDGVDIANDGTVPFRHGERIGFSYLISQKYTGDDAAIKVLRSSNVLKFNIKLDGHRRLIPAHSKGKPPSYYIIAGFVFSTVSVPYLRSEYGKDYEYEAPVKILDKLLYAMPQSPDEQLVVISQVLVADINIGYEEIVNTQVVGFNGKPVKNLKSLAAMVESCDDEYLKFDLDYEQIVVLRTKTAKAATLDILATHCIPSAMSDDLKS* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3834 590 CDD PDZ_serine_protease 333 424 - -
Mtr4g3834 590 PRINTS HtrA/DegQ protease family signature 158 170 IPR001940 GO:0004252|GO:0006508
Mtr4g3834 590 PRINTS HtrA/DegQ protease family signature 186 206 IPR001940 GO:0004252|GO:0006508
Mtr4g3834 590 PRINTS HtrA/DegQ protease family signature 228 252 IPR001940 GO:0004252|GO:0006508
Mtr4g3834 590 PRINTS HtrA/DegQ protease family signature 265 282 IPR001940 GO:0004252|GO:0006508
Mtr4g3834 590 PRINTS HtrA/DegQ protease family signature 374 386 IPR001940 GO:0004252|GO:0006508
Mtr4g3834 590 PANTHER - 4 589 - -
Mtr4g3834 590 Gene3D - 115 213 IPR043504 -
Mtr4g3834 590 MobiDBLite consensus disorder prediction 1 111 - -
Mtr4g3834 590 MobiDBLite consensus disorder prediction 1 15 - -
Mtr4g3834 590 PANTHER PROTEASE DO-LIKE 9 4 589 - -
Mtr4g3834 590 MobiDBLite consensus disorder prediction 16 44 - -
Mtr4g3834 590 SUPERFAMILY PDZ domain-like 358 440 IPR036034 GO:0005515
Mtr4g3834 590 SUPERFAMILY Trypsin-like serine proteases 127 327 IPR009003 -
Mtr4g3834 590 Gene3D - 214 325 IPR043504 -
Mtr4g3834 590 Pfam PDZ domain 335 435 IPR001478 GO:0005515
Mtr4g3834 590 Gene3D - 440 590 IPR046449 -
Mtr4g3834 590 Pfam PDZ domain 442 587 IPR041517 -
Mtr4g3834 590 Pfam Trypsin-like peptidase domain 157 294 - -
Mtr4g3834 590 Gene3D - 328 439 IPR036034 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3834 Mtr-Chr4 52016488 52022494 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3834 K25897 - gmx:100817187 941.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3834 4 52016488 52022494 Mtr4g3834 4 52016488 52022494 ECH