Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3830 ATGGTGATTCCTTCTTCGGAAACACCCACCGTGCGCGTCACCAACATACCCCATACCGCCACCGCCAACGACCTTCTCCGATACCTCGAAACCACTGTTGGCCGTTCCTCCGTCTTCGCTCTCGAAATCTTCAGCGACTACACCAACTGGAAATCTCGCGGCGTTGGCCGTGTCCAGTTCGAGACATTGGAAGCTAAGTCTAAAGCCCTAACTCTCGCCGAGAACAAGAAACTTCTTCTCAGCTCCCATTTCCTCTGTCTTGACGCTTCCTCCGATGACATCATTCCTAGGCCTGCTCTTCCTCGTAACCGCATCAACAATGGTGCCCTTTATGCTGGTTTTCCCATCGGTCCTGATTGCATGAGCGTGCTTCAATCATGGGAAGGTGTTCGAGGTTGGGTTATGCCTGAAAGGCAGAGACTTGATTTCTGGGTTACTCATGGTGATCAGTGTTTTAAGCTTGAAATTCCTTTTGAGAATATTTTGGAGTGTGATGGGTATTGTTCTGATGAAGGTTCTAAACCCAACGCCCTTCTCTTGAAGCTGAGATATGGGCCAAGGATATATCAGAAAATGGCGGGGCCAAATGTAGCTGCCAAGTTTAAGGATGATAGGTATCGATTTTGTAAGGAGAATTTTGAGTTTATGTGGGTGCGCACCACTGACTTCTCAACTTTAAAGTCCATTGGGCACTCTACCTCATTTTTTTGGGAAATTGTGGAAGAATCATTTGATTCTGATGTTTTTCGTAGTTTTCCGCTCTACAGAGAGAATTTGAAGGATCTAAGTCTGGAAGATGGAGAAAAATTCTGTTCTCCAACTGAAACAGTTCCGCTTGTTAAGTGTCGATTGGATTCCAAGTTACCTTATGAGAGTCTTTTCCAATTGAATTCTCTTGTTCATACCCAGAAAATTAGTCTTGCTTCAGTGAATGATGAGTTGATTGACTTGTTGGCAAGCTTGGATGCAGAAACTAAGGCTGTGATTTTTCAAAAATTGCACAAGATGAATTCCACTTGTTATGAGCCTCTAAAATATGTGAGGACTCAATTACACGTGCTTAGTATAAAGAAAAAAAGTGTTCTCCCATCACAGCAGAAAAGGTTGGTGGATAATAACATAATGAGTTGTCATCGAGCCTTGATTACCCCATCAAAGATTTATTGCCTTGGTCCCGAACTTGAAACCTCAAACCATGTGGTAAAGCATTTTGCGGCATATGCTTCAGACTTCATGAGGATTACATTTGTTGAAGAGGATTGGAGTAAGCTTCCAAACAATGCAATCTCAATCACTTTGAAGAAGGGAATGTTCTCAAGGCCTCTTAGAACTGAAATATATAAGCGGGTATTGAATATTCTTCGAGATGGGATTCTAATTGGATCAAAAAGATTTGAGTTTCTTGCCTTCTCTGCTAGTCAACTGCGGTCAAATTCTGTTTGGTTATTTGCTTCTAATGATAAAGTGAAAGCAGCAGATATCAGAGAATGGATGGGAAGCTTCAATAACATCCGTAGTGTTTCCAAATGTGCAGCAAGAATGGGTCAGTTGTTCAGTTCTTCCAGGCAAACTTTTGAAATGGCCCCTCAAGATGTGGATTTAATTCCAGATATTGAAATCACCTCTGATGGTATAGACTACTGTTTCTCAGATGGTATTGGAAAAATTTCACAGTCTTTTGCAAGGCAACTTGCAGAAAAGCTAAAATTAGATGAGAATCGTATTCCTTCAGCATTTCAAATTCGGTACGGTGGATATAAAGGTGTCATTGCTGTTGATCGCCATTCTTTTAAGAAGTTATCATTGCGTAAAAGTATGCTTAAGTTTGAATCCAAAAACAGAATGCTTTGCGTCACTAAATGGAGTGAGTCAATGCCGTGCTTTCTCAATCGAGAGATTATATCCCTGCTGTCCACCTTAGGAATTAAAGATGAGGCGCTTTTGGCATTGCAAGAGGATCAATTGCAGTTGCTAGGAAAGATGTTGACTGATAAGGAAGCGGCCTTGGATGTTTTGGAAAGTTTAAATGGAGCTGATTCAAATAGCATTCTAGTCAAGATGCTGCATAGGTTTTATGAGCCAAACAGTGAGCCTTACCTATCAATGATGCTCAAGGCTCATTATACGTACCAGTTATCTGATTTGAAAAGCAGATGCCGAATATTTGTGCCCAAGGGCCGAGTCTTGATTGGCTGCTTGGATGAGACTGGTCTATTGAACTATGGCCAAGTATTTGTCCGCATAACTGTGGCAAAAACTAAGGAAAAGTTTGGAGATGAAAACTTAAGGAACGTGGATGGTGATGATAGCACTCGTATTATAGTAGGTAAGGTGGTAGTGACAAAAAACCCTTGTCTTCACCCAGGAGATATCAGAGTCCTTGATGCTGTCTACAGTGAAGAATTAGAAGAAAAGGGCTTGAGGGATTGCCTTGTATTTCCACAAAAAGGACATAGGCCTCATCCAAATGAGTGCTCTGGAGGTGATCTTGACGGGGATTTATTTTTCATAAGCTGGGACAAAGATCTAATCCCAGCTCAAACTGAAAATCCAATGGACTACACAGGAAGAAGGCCTCGTATAATGGACCATAAGGTGACTCTGGAGGAAATACACCAATTTTTTGTTGATTACATGATCAATGATACTTTGGGTGCTATCTCCACCGCACATTTGGTTCATGCTGACCGTGAACACGATAAGGCCAAGAGTAGAAAATGTCTGGAGTTGGCTGAGCTGCATTCCATGGCAGTTGATTTTGCAAAGACTGGAGCTCCTGCAGAAATGCCAAGATCTTTGAAACCAAGAGAGTTTCCAGATTTTATGGAGAGGTTCGAAAAGCCTATGTATATATCCAAAGGTGTATTAGGAAAACTCTACCGCGCCACAATTGATTCAAACTTGCAAGTAAGGTTTGACATGGTCATGTCTGAGAAGTTTGCCAAAGAAGCATATGATCACCAGCTTGAAGTTGATGGTTTTGAGGTCTTTCTTGAGACTGCCTTAAGTCACAGAGATATGTATGCACAGAAGATGATCTCTTTGATGAGCTTCTATGGTGCAACGACTGAGGATGAAATGCTAACTGGTAACTTGCAAAACCGTGCATCTTATTTGCAGAGGGATAACAGGAGATATGGAGATATGAAGGATCGAATTCTAATCTCAGTAAAGGATCTTCAGCTGGAAGCTAAAGAATGGTTTGAAAGTGATTGTCAGCCGCATGAATATCAACTTATGGCATCTGCATGGTACCATGTGACCTATCACCCCAAATATTACATCGAAAGCTCCACTTTTTTAAGCTTTCCATGGATTGTCGGTGACATTTTATTGCACATCAAGTCTGCAAATGCTCCCTCTGTCCCATAA 3372 0.4164 MVIPSSETPTVRVTNIPHTATANDLLRYLETTVGRSSVFALEIFSDYTNWKSRGVGRVQFETLEAKSKALTLAENKKLLLSSHFLCLDASSDDIIPRPALPRNRINNGALYAGFPIGPDCMSVLQSWEGVRGWVMPERQRLDFWVTHGDQCFKLEIPFENILECDGYCSDEGSKPNALLLKLRYGPRIYQKMAGPNVAAKFKDDRYRFCKENFEFMWVRTTDFSTLKSIGHSTSFFWEIVEESFDSDVFRSFPLYRENLKDLSLEDGEKFCSPTETVPLVKCRLDSKLPYESLFQLNSLVHTQKISLASVNDELIDLLASLDAETKAVIFQKLHKMNSTCYEPLKYVRTQLHVLSIKKKSVLPSQQKRLVDNNIMSCHRALITPSKIYCLGPELETSNHVVKHFAAYASDFMRITFVEEDWSKLPNNAISITLKKGMFSRPLRTEIYKRVLNILRDGILIGSKRFEFLAFSASQLRSNSVWLFASNDKVKAADIREWMGSFNNIRSVSKCAARMGQLFSSSRQTFEMAPQDVDLIPDIEITSDGIDYCFSDGIGKISQSFARQLAEKLKLDENRIPSAFQIRYGGYKGVIAVDRHSFKKLSLRKSMLKFESKNRMLCVTKWSESMPCFLNREIISLLSTLGIKDEALLALQEDQLQLLGKMLTDKEAALDVLESLNGADSNSILVKMLHRFYEPNSEPYLSMMLKAHYTYQLSDLKSRCRIFVPKGRVLIGCLDETGLLNYGQVFVRITVAKTKEKFGDENLRNVDGDDSTRIIVGKVVVTKNPCLHPGDIRVLDAVYSEELEEKGLRDCLVFPQKGHRPHPNECSGGDLDGDLFFISWDKDLIPAQTENPMDYTGRRPRIMDHKVTLEEIHQFFVDYMINDTLGAISTAHLVHADREHDKAKSRKCLELAELHSMAVDFAKTGAPAEMPRSLKPREFPDFMERFEKPMYISKGVLGKLYRATIDSNLQVRFDMVMSEKFAKEAYDHQLEVDGFEVFLETALSHRDMYAQKMISLMSFYGATTEDEMLTGNLQNRASYLQRDNRRYGDMKDRILISVKDLQLEAKEWFESDCQPHEYQLMASAWYHVTYHPKYYIESSTFLSFPWIVGDILLHIKSANAPSVP* 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3830 1123 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 92 IPR000504 GO:0003723
Mtr4g3830 1123 Pfam RNA dependent RNA polymerase 382 962 IPR007855 GO:0003968
Mtr4g3830 1123 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 5 1119 - -
Mtr4g3830 1123 SUPERFAMILY RNA-binding domain, RBD 5 79 IPR035979 GO:0003676
Mtr4g3830 1123 CDD RRM_SF 11 78 - -
Mtr4g3830 1123 Gene3D - 3 94 IPR012677 -
Mtr4g3830 1123 PANTHER RNA-DEPENDENT RNA POLYMERASE 5 1119 IPR007855 GO:0003968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3830 Mtr-Chr4 51988976 51994323 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3830 K11699 - gmx:100808274 1785.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3830 4 51988976 51994323 Mtr4g3830 4 51988976 51994323 ECH