Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3739 ATGGTGAAAACTGGAAGACCGAAAGAACAAGTAGCGATTGATGCAATCAATTATGCTATGAAAGCTCTCAAGAAACGCCATCTTCTCGAAGAAGGCGCTCATGCTCCTGCTTTTCTCGCACTTTCTAGACCCATCGTTTCTCAGGGTTTTGAGTGGAAAGAGAAAGCAGAGAATTTGGAAGTGGAACTTCAGCAATGCTATAAAGCTCAATCTCGGTTATCCGAGCAACTTGTTGTGGAAGTAGCTGAGTCTAGAGTTTCAAAAGCTTCGCTTCAAGAGAAAGAAAATGTGATTTCTGATATGCAGAAGGAGTTGACAGAATTGAGGGATGAGTGCTCTCAATTAAAGACGGATTTGGAACAAAAGATTAATGAAGTAGAATTAGTTATCAGCGAGAATTCAGAACTGAAAGCACAACTGGAGCAGATGACTACTAAAGCTAATGAAGCTGAAGCTGAAAATAAGATGTTGATTGACCGCTTGATGTTAGAAAAGATGAAGGATGCTGAACGCCTAAATGAGGCAAATGCACTATATGAAGACATGGTTCAGCGGCTAAGGGCTAGTGGTCTAGAACAACTTGCAAGGGAACAAGTAGATGGAATTGTTCGTCGAAGTGAAGAAGGTGCTGAATTCTTTTCAGAGTCAAACATCCCTTCCAATTGCAAATACAGGCTAAATGCACATGAAGGAGGTTGTGCTTCCTTATTGTTCGAGTACAATTCTAGTAGATTGATTACTGGGGGACAGGATCGTTCAGTTAAAGTGTGGGATACAAATACAGGATCGTTAAGTTCAAGTCTTACTGGCTGCCTTGGCTCAGTATTGGATCTCACTATCACCAATGATAATCGATCTGTTATTGCTGCAAGCAGCTCAAACAACTTGTATGTGTGGGATCTTAGCTCAGGTCGAGTCCGTCATACCCTTACTGGACACACGGATAAAGTTTGTGCGGTTGATGTTAGCAAGGTTTCGAGTCGTCTTGTTGTCAGTGCAGCTTACGACCGTACTATAAAAGTTTGGGACTTGATGAAAGGTTACTGCACAAACACAATCATGTTTCCCAGCAACTGCAATGCTCTTTGCTTCAGCACAGATGGACAGACCATATTTTCTGGACATGTCGATGGTAATCTTCGGTTATGGGACATTCAGAGTGGAAGGCTGCTAAGTGAGGTTGCTGCACATTCACACGCCGTCACGTCAATATCCCTTTCTCGAAATGGAAATATTGCATTGACCAGTGGAAGGGATAATTTGCACAATTTGTTTGATGTGCGATCTCTGGAAGTTTGTGGCACATTACGAGCCACAGTTAACAGAGTGGCTTCTAATTGGAGTCGCTCGTGTATCAGTCCAGACAACAATCATGTTGCCGCTGGGTCTGCTGATGGATCTGTCCATATATGGTCAATATCTAAAGGTGAAATAATCAGTACTCTGAAGGAGCATACTTCTTCTGTTCTCTGTTGTAGTTGGAGTGGAATGGGAAAACCCCTAGCTTCAGCTGACAGGAATGGAATTGTTTCCATCTGGTCATAA 1545 0.4252 MVKTGRPKEQVAIDAINYAMKALKKRHLLEEGAHAPAFLALSRPIVSQGFEWKEKAENLEVELQQCYKAQSRLSEQLVVEVAESRVSKASLQEKENVISDMQKELTELRDECSQLKTDLEQKINEVELVISENSELKAQLEQMTTKANEAEAENKMLIDRLMLEKMKDAERLNEANALYEDMVQRLRASGLEQLAREQVDGIVRRSEEGAEFFSESNIPSNCKYRLNAHEGGCASLLFEYNSSRLITGGQDRSVKVWDTNTGSLSSSLTGCLGSVLDLTITNDNRSVIAASSSNNLYVWDLSSGRVRHTLTGHTDKVCAVDVSKVSSRLVVSAAYDRTIKVWDLMKGYCTNTIMFPSNCNALCFSTDGQTIFSGHVDGNLRLWDIQSGRLLSEVAAHSHAVTSISLSRNGNIALTSGRDNLHNLFDVRSLEVCGTLRATVNRVASNWSRSCISPDNNHVAAGSADGSVHIWSISKGEIISTLKEHTSSVLCCSWSGMGKPLASADRNGIVSIWS* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3739 514 Gene3D - 53 355 IPR015943 GO:0005515
Mtr4g3739 514 ProSitePatterns Trp-Asp (WD) repeats signature. 330 344 IPR019775 -
Mtr4g3739 514 ProSitePatterns Trp-Asp (WD) repeats signature. 371 385 IPR019775 -
Mtr4g3739 514 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 310 344 - -
Mtr4g3739 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 482 514 IPR001680 GO:0005515
Mtr4g3739 514 Coils Coil 56 76 - -
Mtr4g3739 514 Pfam WD domain, G-beta repeat 359 384 IPR001680 GO:0005515
Mtr4g3739 514 Pfam WD domain, G-beta repeat 477 514 IPR001680 GO:0005515
Mtr4g3739 514 Pfam WD domain, G-beta repeat 306 343 IPR001680 GO:0005515
Mtr4g3739 514 Pfam WD domain, G-beta repeat 440 472 IPR001680 GO:0005515
Mtr4g3739 514 Pfam WD domain, G-beta repeat 221 258 IPR001680 GO:0005515
Mtr4g3739 514 Coils Coil 91 160 - -
Mtr4g3739 514 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 482 514 - -
Mtr4g3739 514 Pfam Autophagy protein 16 (ATG16) 54 173 IPR013923 -
Mtr4g3739 514 PANTHER AUTOPHAGY PROTEIN 16-LIKE 12 514 IPR045160 GO:0000045
Mtr4g3739 514 SMART WD40_4 429 472 IPR001680 GO:0005515
Mtr4g3739 514 SMART WD40_4 387 426 IPR001680 GO:0005515
Mtr4g3739 514 SMART WD40_4 261 300 IPR001680 GO:0005515
Mtr4g3739 514 SMART WD40_4 219 258 IPR001680 GO:0005515
Mtr4g3739 514 SMART WD40_4 346 384 IPR001680 GO:0005515
Mtr4g3739 514 SMART WD40_4 303 343 IPR001680 GO:0005515
Mtr4g3739 514 SMART WD40_4 475 514 IPR001680 GO:0005515
Mtr4g3739 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 394 429 IPR001680 GO:0005515
Mtr4g3739 514 Gene3D - 450 514 IPR015943 GO:0005515
Mtr4g3739 514 Gene3D - 356 449 IPR015943 GO:0005515
Mtr4g3739 514 SUPERFAMILY WD40 repeat-like 218 513 IPR036322 GO:0005515
Mtr4g3739 514 ProSitePatterns Trp-Asp (WD) repeats signature. 245 259 IPR019775 -
Mtr4g3739 514 Coils Coil 169 189 - -
Mtr4g3739 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 309 IPR001680 GO:0005515
Mtr4g3739 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 310 352 IPR001680 GO:0005515
Mtr4g3739 514 PRINTS G protein beta WD-40 repeat signature 245 259 IPR020472 -
Mtr4g3739 514 PRINTS G protein beta WD-40 repeat signature 330 344 IPR020472 -
Mtr4g3739 514 PRINTS G protein beta WD-40 repeat signature 371 385 IPR020472 -
Mtr4g3739 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 226 267 IPR001680 GO:0005515
Mtr4g3739 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 453 481 IPR001680 GO:0005515
Mtr4g3739 514 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 226 263 - -
Mtr4g3739 514 PANTHER AUTOPHAGY-RELATED 16, ISOFORM F 12 514 - -
Mtr4g3739 514 CDD WD40 222 514 - -
Mtr4g3739 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 361 393 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3739 Mtr-Chr4 51155368 51158836 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3739 310 513 Miscellaneous Gene Families AT5G08390 19.712 6.41e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3739 K17890 - gmx:100778336 868.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3739 4 51155368 51158836 Mtr4g3739 4 51155368 51158836 ECH