Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3738 ATGGAAATGAAGAAGCTCTTGTTTGTCTCCTTATCCCTTGCTTTGGTTTTAGGAATAGCTAAGAGCTTTGATTTCGAGGAGAATGATTTAGCATCAGAGAAAAGTTTGTGGGATTTGTACGAGAGATGGAGAAGTCACCACACAGTTACTCGAAGCCTTGATGAGAAGAATAATCGTTTTAACGTGTTCAAAGCCAATGTTATGCATGTTCATAATACCAATAAATTAGATAAACCTTATAAGCTTAAGTTGAATAAGTTTGCTGACATGACTAATTACGAATTTAGGAGCATCTATGCTGATTCTAAGGTTAATCACCATAGAATGTTCCGTGGCATGTCACATGACAATGGGCCGTTCATGTATGAGAATGTGGAGGGTGTTCCTTCTTCGATTGATTGGAGGAAGATAGGTGCTGTCACTGGTGTAAAGGATCAAGGCCAATGCGGTAGTTGCTGGGCTTTTTCAACTATTGTAGCTGTTGAAGGTATTAACCAAATCAAGACACAAAAACTAGTATCCTTGTCGGAGCAAGAACTTGTGGATTGTGACACTGAAGTGAATCAAGGATGCAATGGCGGGTTAATGGAATATGCATTCGAGTTCATCAAGCAAAATGGCATAACAACAGAAACCAATTATCCTTATGCTGCAAAAGATGGAACCTGTAATATACAAAAGGAGAATAAACCAGCAGTGTCAATTGATGGCCATGAGAATGTCCCTGCTAACAATGAAAAAGCATTGTTGAAAGCTGCTGCCAACCAACCTATTTCTGTAGCTATTGATGCTGGGGGATCTGATTTCCAGTTTTATTCAGAGGGAGTATTTACTGGACACTGTGGTACTGAGCTGAATCATGGGGTAGCAATTGTGGGGTATGGAGCAACTCAAGATGGAACAAAATATTGGACAGTGAAGAACTCTTGGGGAAGTGAATGGGGAGAACAGGGTTACATTAGAATGCAAAGGGCCATATCTCATAAGCAAGGTCTATGTGGCATAGCTATGGAGGCTTCCTATCCAATCAAAAAGTCATCTAAAAACCCAACAAAAAGTTCACTTCCGAAAGATGAGCTTTAA 1083 0.3998 MEMKKLLFVSLSLALVLGIAKSFDFEENDLASEKSLWDLYERWRSHHTVTRSLDEKNNRFNVFKANVMHVHNTNKLDKPYKLKLNKFADMTNYEFRSIYADSKVNHHRMFRGMSHDNGPFMYENVEGVPSSIDWRKIGAVTGVKDQGQCGSCWAFSTIVAVEGINQIKTQKLVSLSEQELVDCDTEVNQGCNGGLMEYAFEFIKQNGITTETNYPYAAKDGTCNIQKENKPAVSIDGHENVPANNEKALLKAAANQPISVAIDAGGSDFQFYSEGVFTGHCGTELNHGVAIVGYGATQDGTKYWTVKNSWGSEWGEQGYIRMQRAISHKQGLCGIAMEASYPIKKSSKNPTKSSLPKDEL* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3738 360 Pfam Cathepsin propeptide inhibitor domain (I29) 40 95 IPR013201 -
Mtr4g3738 360 Gene3D Cysteine proteinases 14 345 - -
Mtr4g3738 360 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 146 157 IPR000169 -
Mtr4g3738 360 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 20 350 - -
Mtr4g3738 360 PRINTS Papain cysteine protease (C1) family signature 146 161 IPR000668 GO:0006508|GO:0008234
Mtr4g3738 360 PRINTS Papain cysteine protease (C1) family signature 287 297 IPR000668 GO:0006508|GO:0008234
Mtr4g3738 360 PRINTS Papain cysteine protease (C1) family signature 303 309 IPR000668 GO:0006508|GO:0008234
Mtr4g3738 360 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 303 322 IPR025661 -
Mtr4g3738 360 SMART pept_c1 128 343 IPR000668 GO:0006508|GO:0008234
Mtr4g3738 360 CDD Peptidase_C1A 129 342 IPR039417 -
Mtr4g3738 360 SMART Inhibitor_I29_2 40 95 IPR013201 -
Mtr4g3738 360 Pfam Papain family cysteine protease 128 343 IPR000668 GO:0006508|GO:0008234
Mtr4g3738 360 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 285 295 IPR025660 -
Mtr4g3738 360 SUPERFAMILY Cysteine proteinases 36 343 IPR038765 -
Mtr4g3738 360 PANTHER KDEL-TAILED CYSTEINE ENDOPEPTIDASE CEP1 20 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3738 Mtr-Chr4 51149826 51151620 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3738 K16292 - gmx:100806581 595.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3738 4 51149826 51151620 Mtr4g3738 4 51149826 51151620 ECH
Mtr4g3738 4 51149826 51151620 Mtr3g2394 3 37801513 37803423 PCT