Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3723 ATGGAAGCCATGGGCGTGTTTTGCGGAACCAATAGTATCTATGTCACATCCTCTCAATTACGCACCTCAAACACAAACACAAGAAGCTCTCAATTACGCACCACCCAACACCTTTCTGCATTTCCTTCTAAATCCCATCTTTTTTCATCTTCTACTTCTTCTTCCTATGCCAAAACCATCCGCACTAAAAGCTCCACCAATACCGGCATTTTCCTTCCCCACTTAATTGCTTCTCTCGAACAAGTTGACCGAACTTATATTATGGTGAAACCCGATGGCGTGCAACGTGGTCTTGTGGGTGAAATTATTTCTAGGTTTGAGAAGAAGGGGTTTAAGTTAATTGGCTTGAAGCTCTTTCAATGCTCTAAAGAATTAGCTGAGGAGCATTACAAGGACCTAAATCAAAGGTCTTTCTTCCCTAAGCTGAGTGAATATATTACTTCGGGCCCCGTTGTGTCTATGGCTTGGGAGGGTGTTGGAGTAGTGCCATCAGCACGTAAGCTTATAGGAGCAACAAATCCTCTGCAAGCAGAACCAGGCACAATAAGAGGAGACTTTGCTGTTGAAACAGGAAGGAATGTTATCCATGGCAGTGACAGCCCTGAAAATGGCGAGCGTGAAATAGCTCTATGGTTCAAGGAAGGTGAATTATGTGAATGGACTCCTGTCCTACATCCATGGCTAAGAGAATAA 693 0.4372 MEAMGVFCGTNSIYVTSSQLRTSNTNTRSSQLRTTQHLSAFPSKSHLFSSSTSSSYAKTIRTKSSTNTGIFLPHLIASLEQVDRTYIMVKPDGVQRGLVGEIISRFEKKGFKLIGLKLFQCSKELAEEHYKDLNQRSFFPKLSEYITSGPVVSMAWEGVGVVPSARKLIGATNPLQAEPGTIRGDFAVETGRNVIHGSDSPENGEREIALWFKEGELCEWTPVLHPWLRE* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3723 230 Hamap Nucleoside diphosphate kinase [ndk]. 82 217 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Mtr4g3723 230 ProSitePatterns Nucleoside diphosphate kinases active site. 193 201 IPR023005 -
Mtr4g3723 230 Gene3D - 78 230 IPR036850 -
Mtr4g3723 230 SMART ndk_5 82 219 IPR034907 -
Mtr4g3723 230 CDD NDPk_I 84 212 - -
Mtr4g3723 230 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE II, CHLOROPLASTIC 25 229 - -
Mtr4g3723 230 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 25 229 - -
Mtr4g3723 230 SUPERFAMILY Nucleoside diphosphate kinase, NDK 82 229 IPR036850 -
Mtr4g3723 230 PRINTS Nucleoside diphosphate kinase signature 85 107 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Mtr4g3723 230 PRINTS Nucleoside diphosphate kinase signature 129 148 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Mtr4g3723 230 PRINTS Nucleoside diphosphate kinase signature 149 166 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Mtr4g3723 230 PRINTS Nucleoside diphosphate kinase signature 170 186 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Mtr4g3723 230 PRINTS Nucleoside diphosphate kinase signature 193 212 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Mtr4g3723 230 Pfam Nucleoside diphosphate kinase 84 216 IPR034907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3723 Mtr-Chr4 50986660 50991441 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3723 K00940 - gmx:100500478 313.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3723 4 50986660 50991441 Mtr4g3723 4 50986660 50991441 ECH
Mtr4g3723 4 50986660 50991441 Mtr5g1385 5 14495098 14499922 PCT