Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3711 ATGTTGAACATGCAACAAGTTGATAAGAGAAAGATGGTGGTGGAAGAAGGAGAGGCATTGGTGGCATGCAGTGACAAAAGCATGAGAATTGGGGTGACAATATGGGATATGGAAACAGGAGAAAAGATGCTTCACATACCAACATGTGCTTCACCACCTTTAGGTATGTTATGCTTAAGAAATCGATTTCTCGTGGCATCACAATTGAACAAACATGGATCTGTAGGTGGAGGAGCCATTGTTGTCTGGCCCTTGAACAAGCCGCAACAACCACTTTTGAATTACACAGTGGAGGCCATTGGGCCACTTTCTTGCACAAAAGAAGGCATATACCTTGTGGGAGGTGCTTTATCTGGAACTGCTTATATCTGGGATGTGACTAGTGGAAAATTGTTGAAGACTTGGACAGCTCATTATAAATCTGTAGACCACATAATATTTTCTAATGATGATTCTCTTCTTATTTCTGGGTCAATTGATGGTATGATATGTGTTTGGTCCATGATAAGTTTGCTAGATGTGGAAGAAACAGAAAGCTCGAATCCTTTATTACATTGTTTGTCGGGGCACATGTCCTCCATAACAGGTCTTTTAGCTACAACTTGCAGTTGCTTTTCAATTTTAATATCAAGCTCTCTTGATGGAACATGCAAGGTTTGGGATTTCATCACTGGAAGACTTATGCAGACTCAAGGTTATCCTTTGGCAATAACTTGCATCACACTTCACCAAGGAGAACATATTTTGTTTTGTGGTGCAAAAAATGGAACAATAATTGTCAACATGCTTGATATTGGTTTGGAACAAGGTCCTAATTTCATGATTAGAGAAGACAAATCACTTGAATTGACAGGACACATGGGAGCCATTACTGCAATGGCATCTAGTCGGACATGCCTAATATCGTCTTCTGAAGACTGCACAATCTGCATATGGGATGTGATCGGTTGGACAATCACTCGAAGATTCGATCTTCAAAAATGGAAAGTAACTAATCTCGTCGTGATACCTCGGTCTCCAGCATTCTCCGCATCGAATAACACGAGAGAGCTCAAACGATATATCGTTTCTCCATTGGATAAGTGTCCTCTGCAGATCAGCAGATACAAGGAAACTACCACTCTTCTTTCTTTGTGTCGCCTCTTCAAAGAAAAACAAACTTACATTGATTTAAGAAGCACTGGTTTATTGAGACAAAATATGTTTGGTTCACAGAAAACAGACATGCCTATGACCATGACCATAGAAATGAAAGTGGAAACAAATATAGAGAATCGTTCATGGGGAATAAAGATGGCAAAACATGTAATAGTGATGAATAGACAGTTGAAGTCACGATTGTTGGACATGATACGTTGCAGATTGCTTTGTACAAACAAAATTCACTCTCAAAAAACAGCTAGAAAGAAGCTCAAAATTAAGAGTATTTCATTGGAAGGGGAAAATTAA 1449 0.392 MLNMQQVDKRKMVVEEGEALVACSDKSMRIGVTIWDMETGEKMLHIPTCASPPLGMLCLRNRFLVASQLNKHGSVGGGAIVVWPLNKPQQPLLNYTVEAIGPLSCTKEGIYLVGGALSGTAYIWDVTSGKLLKTWTAHYKSVDHIIFSNDDSLLISGSIDGMICVWSMISLLDVEETESSNPLLHCLSGHMSSITGLLATTCSCFSILISSSLDGTCKVWDFITGRLMQTQGYPLAITCITLHQGEHILFCGAKNGTIIVNMLDIGLEQGPNFMIREDKSLELTGHMGAITAMASSRTCLISSSEDCTICIWDVIGWTITRRFDLQKWKVTNLVVIPRSPAFSASNNTRELKRYIVSPLDKCPLQISRYKETTTLLSLCRLFKEKQTYIDLRSTGLLRQNMFGSQKTDMPMTMTIEMKVETNIENRSWGIKMAKHVIVMNRQLKSRLLDMIRCRLLCTNKIHSQKTARKKLKIKSISLEGEN* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3711 482 Gene3D - 231 349 IPR015943 GO:0005515
Mtr4g3711 482 ProSiteProfiles Trp-Asp (WD) repeats profile. 135 168 IPR001680 GO:0005515
Mtr4g3711 482 Pfam WD domain, G-beta repeat 281 313 IPR001680 GO:0005515
Mtr4g3711 482 Pfam WD domain, G-beta repeat 129 167 IPR001680 GO:0005515
Mtr4g3711 482 Pfam WD domain, G-beta repeat 183 221 IPR001680 GO:0005515
Mtr4g3711 482 PRINTS G protein beta WD-40 repeat signature 154 168 IPR020472 -
Mtr4g3711 482 PRINTS G protein beta WD-40 repeat signature 208 222 IPR020472 -
Mtr4g3711 482 PRINTS G protein beta WD-40 repeat signature 300 314 IPR020472 -
Mtr4g3711 482 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 230 IPR001680 GO:0005515
Mtr4g3711 482 ProSiteProfiles Trp-Asp (WD) repeats profile. 283 314 IPR001680 GO:0005515
Mtr4g3711 482 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 135 168 - -
Mtr4g3711 482 ProSitePatterns Trp-Asp (WD) repeats signature. 300 314 IPR019775 -
Mtr4g3711 482 PANTHER WD-REPEAT PROTEIN 18 17 476 IPR045227 -
Mtr4g3711 482 SMART WD40_4 88 125 IPR001680 GO:0005515
Mtr4g3711 482 SMART WD40_4 128 167 IPR001680 GO:0005515
Mtr4g3711 482 SMART WD40_4 224 262 IPR001680 GO:0005515
Mtr4g3711 482 SMART WD40_4 180 221 IPR001680 GO:0005515
Mtr4g3711 482 SMART WD40_4 276 313 IPR001680 GO:0005515
Mtr4g3711 482 SUPERFAMILY WD40 repeat-like 30 346 IPR036322 GO:0005515
Mtr4g3711 482 Gene3D - 4 230 IPR015943 GO:0005515
Mtr4g3711 482 PANTHER PROTEIN ROOT INITIATION DEFECTIVE 3-LIKE 17 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3711 Mtr-Chr4 50863359 50868229 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3711 109 252 Miscellaneous Gene Families AT5G08390 24.828 2.17e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3711 K14829 - gmx:102662801 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3711 4 50863359 50868229 Mtr4g3711 4 50863359 50868229 ECH