Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3705 ATGAAGAGGGAAATGGAATTTGAGCGTGTTCTTAGTTACTTTGATGAAGATGGAGACGGAAAAATTTCGCCAAACGAGTTAAGGAGTCGAATGGCGAAGATTGGCGGAGAGTTTCAATTGAAAGAAGTTGAAATTGCTATTGAGGCATTGGATTCTGATGGTGATGGGTTATTGAGTTTGGGAGATTTGATTACGTTAATGGAATCAGGGGGAGAGGAGGAAAAATTGAAGGATTTGAGGGAAGCTTTTGAAATGTATGATAATGAAGGATGTGGATTCATAACGCCAAAAAGTTTGAAGAGGATGTTGAAAAAACTGGGGGATTCTAAGTCCATTGAAGAATGCAAATTGATGATTAAAAGATTTGATTTGGATGGTGATGGTGTGCTTAGTTTTGAAGAATTCAGAATCATGATGGATTGA 423 0.3759 MKREMEFERVLSYFDEDGDGKISPNELRSRMAKIGGEFQLKEVEIAIEALDSDGDGLLSLGDLITLMESGGEEEKLKDLREAFEMYDNEGCGFITPKSLKRMLKKLGDSKSIEECKLMIKRFDLDGDGVLSFEEFRIMMD* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3705 140 Pfam EF-hand domain pair 9 67 IPR002048 GO:0005509
Mtr4g3705 140 Pfam EF-hand domain pair 77 139 IPR002048 GO:0005509
Mtr4g3705 140 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Mtr4g3705 140 CDD EFh 78 139 IPR002048 GO:0005509
Mtr4g3705 140 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 3 140 - -
Mtr4g3705 140 CDD EFh 6 67 IPR002048 GO:0005509
Mtr4g3705 140 SMART efh_1 6 34 IPR002048 GO:0005509
Mtr4g3705 140 SMART efh_1 78 106 IPR002048 GO:0005509
Mtr4g3705 140 SMART efh_1 114 140 IPR002048 GO:0005509
Mtr4g3705 140 SMART efh_1 42 70 IPR002048 GO:0005509
Mtr4g3705 140 Gene3D - 70 140 - -
Mtr4g3705 140 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Mtr4g3705 140 Gene3D - 1 69 - -
Mtr4g3705 140 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Mtr4g3705 140 ProSitePatterns EF-hand calcium-binding domain. 123 135 IPR018247 -
Mtr4g3705 140 SUPERFAMILY EF-hand 6 139 IPR011992 -
Mtr4g3705 140 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 3 140 - -
Mtr4g3705 140 ProSiteProfiles EF-hand calcium-binding domain profile. 110 140 IPR002048 GO:0005509
Mtr4g3705 140 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Mtr4g3705 140 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3705 Mtr-Chr4 50800809 50801758 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3705 6 139 EF-hand Containing Proteins AT1G76650 46.269 2.54e-35 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3705 K13448 - gmx:100816563 204.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3705 4 50800809 50801758 Mtr3g2359 3 37425809 37426615 ECH
Mtr4g3705 4 50800809 50801758 Mtr4g3705 4 50800809 50801758 ECH