Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3542 ATGGAGGTTGCAACCGCAAACGCATCGTTCACCTTCTTATCAAAAAAGCCCATGCTCATTTCACCCTCTTCATCACGAACCCTATCCCCTATCAGACCCATCAAATCCTCTTTCTTCAGAAACTCCATTTCCACGGATTTCGTCGCTCCTTCTTCCGCAATCACCAGTTCCACTAGTCATTTCTCCGGCCACAAGCTCCGTCCTCCGTGCCTCAATCCCGCCACGTTTCAAAGCTCAGGCAGTAAAAGAGGCGTCGTTACTATGGTTATTCCTTTCTCAAGAGGGACTGCATGGGAGCAACCTCCACCAGACTTAGCTTCTTACCTGTACAAAAATCGAATTGTTTACTTGGGCATGTCTCTCGTTCCATCTGTTACAGAGTTGATGGTTGCTGAATTTCTTTACCTTCAATATGACGATGAAACAAAACCCATTTATATGTACATAAACTCCACCGGAACAACAAAGGGAGGTGAGAAGTTGGGTTATGAGACTGAAGCACTTGCAGTTTATGATTTGATGAGGTACATCAAGCCTCCTATTTTTACTCTCTGTGTTGGCAATGCTTGGGGAGAGGCAGCCTTACTTTTGGCTGCTGGTGCAAAGGGTAACCGTTCAGCTTTGCCATCATCAACTATAATGATAAGACAGCCTATTGCGCGGTTTCAAGGTCAAGCAACAGACGTCAACCTTGCAAGAAAAGAAATCACTAGAGTGAAGACAGAATTGGTTAATTTGTTAGCAAAGCACACTGAAAAAACACCTGAGCAGATTGAAGCTGATATTCGGCGCCCAAAGTATTTTAGTCCAACTGAAGCTGTTGAGTATGGAATCATAGACAAGGTTTTGTACAATGAGAGGGGCTCTATGGACCGTGGAGTTGTTTCTAACCTTAAAAAGGCACAGCTTATTTGA 915 0.4415 MEVATANASFTFLSKKPMLISPSSSRTLSPIRPIKSSFFRNSISTDFVAPSSAITSSTSHFSGHKLRPPCLNPATFQSSGSKRGVVTMVIPFSRGTAWEQPPPDLASYLYKNRIVYLGMSLVPSVTELMVAEFLYLQYDDETKPIYMYINSTGTTKGGEKLGYETEALAVYDLMRYIKPPIFTLCVGNAWGEAALLLAAGAKGNRSALPSSTIMIRQPIARFQGQATDVNLARKEITRVKTELVNLLAKHTEKTPEQIEADIRRPKYFSPTEAVEYGIIDKVLYNERGSMDRGVVSNLKKAQLI* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3542 304 CDD S14_ClpP_2 104 282 IPR001907 GO:0004176|GO:0004252|GO:0006508
Mtr4g3542 304 Gene3D - 74 290 - -
Mtr4g3542 304 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 13 303 IPR023562 -
Mtr4g3542 304 SUPERFAMILY ClpP/crotonase 98 285 IPR029045 -
Mtr4g3542 304 Pfam Clp protease 104 284 IPR023562 -
Mtr4g3542 304 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 13 303 - -
Mtr4g3542 304 Coils Coil 229 249 - -
Mtr4g3542 304 PRINTS Clp protease catalytic subunit P signature 104 119 IPR001907 GO:0004176|GO:0004252|GO:0006508
Mtr4g3542 304 PRINTS Clp protease catalytic subunit P signature 144 164 IPR001907 GO:0004176|GO:0004252|GO:0006508
Mtr4g3542 304 PRINTS Clp protease catalytic subunit P signature 183 200 IPR001907 GO:0004176|GO:0004252|GO:0006508
Mtr4g3542 304 PRINTS Clp protease catalytic subunit P signature 204 223 IPR001907 GO:0004176|GO:0004252|GO:0006508
Mtr4g3542 304 PRINTS Clp protease catalytic subunit P signature 261 280 IPR001907 GO:0004176|GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3542 Mtr-Chr4 49165012 49172810 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3542 K01358 - gmx:100780029 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3542 4 49165012 49172810 Mtr4g3542 4 49165012 49172810 ECH