Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3530 ATGGTGCTTCCTTTTGCCAAATACATTCTATTCCAAAACCCCTTTCTCAAAAAGCTTCCACCTTTGCAAATCATTCTTCATGGGCATGTCAATTTCAACCAATTCAATACATTTTCGCAAAATATTTCAACTTTCTCTGACAACTGTGAGAGGCTTTCATGGGAACGTTCCACTCAAGAAATTCTAGTGGGTAAGCTTAAATTTGCTTTGAGGAATCATCAATTGCAAGAAGCATTGGAAACTTTTCGTGATTTTCGAAACCTTTATGGTTACCCTGAGATTAATTTATTGAATCAGCTTATTGTGCAATTGTGTTATTCTTCTAATCATGTTTTGGTGAGAAAAGCATGTGATTTGGTTTTGAGAATTGTTGATGAGAATTCAGGTTTGATTCATGTTGATACGTTGACAAAACTTGCTTTGTCTTTGGCTAGAATGCAAATGCCGTCTCCTGCATCCGTTATACTTAGGTTGATGCTTACTAAAGGGTTTGTGCCATCTATGAATTTTTTGTCCTTGATTGTGTTTCATATTGTGAAGACAGAAATTGGAACACATCTTGTATCGAATTATCTGTCTCAAGTTTGTGATTTTTATAATGGTTTGAAGGATAAAAAGGCGCAACATGCAATCATGTTGAAGCCGGATACTTTGGTATTTAATCTTGTTCTTGATGCTTGTGTGAGGTTTAAGTTATGTTTGAAGGGCTTGTGTCTGATTGAATTAATGCCGCTAATGGGGACAGTGGCTGATGCACACTCAATTGTGATAATTTCGCAGATTTTAGAAATGAATGGTTTGAGAGATGAATTGATGGAATTGAAATGTCATATTGATGGAGTTTCGGCGTCTTATGTTCGGCATTATCGTCAGTTCTATGATAGTTTGTTGAGGTTGCACTTTAAATTTAACGACATTGATGCTGCCTCTAAGCTTGTTTTGGATATGAATAGCTCGCATAATTGTCACAATAATGAAGAATATAGGAATCACTTACAAAAGCCGAGCTTTGTTGCCATTGGATCACCTAACCTTAAGAATGCATTAAAGATACATATAGAGCCTGAGCTACTGCAGAAGGACACTGTGCTTAAATTGGAAGGTAGAGAAGGTCTTGTTTTTTATAAGGGTGGGAAACTTACTCTTAGTAATAGAGCTTTGGCTAAGTTTATCATTGGTTACAAAAAAGATGGTAGAATTAGTGAACTTTCGAAACTTTTACTTAGCATTCATGGGGAACTATACTCAGCGACAGGATCTGGGTTGTGTTCTGATGTGATCAGTGCTTGCATTCAGATGGGATGGCTTGAGTCTGCTCATGATATTTTGGACGATGCAGAGGCTGCCGGGTCTCCAATGGGTTGCGATATGTATATTTTACTCTTGTCTGCATATCAGAAGGAGGAAATGCAAAGAGAAGCTCAGGCACTGCTAAAACAAATGAAAAAGATTGATTTTCTCCCAGAACTGTCTAATGATGCTATTGACGAACACGTCCTTTGTCGAGAAACATCAAATTCAGTTGGTAAATCAGATTTGGCTGTCGCCTTAGCTCAAATATTGAACGCTGAAGATCAAACAGATATTCCTTTAGTGTATAACTTCAATTCTTCGATCTTCTTTTTCTGCAAGGCAAGAATGATAGAGGATGCATTGAGGGCATATAGAAAAATGTGCGAAATGAAAATTCGACCGACGAATCAAACTTTTGCTCATCTCGTGTGTGGATATTCTTCTCTCGGTATGTATCGTGAGATTACGTTCTTTTGGGGAGACATCAAGAGATTCATGAAGAACAACTATTTAGTTGTAAATAGAGATCTATATGAGTTACTGCTGCTAAACTTCATTCGAGGAGGTTACTTTGAGAGAGTGATGGAGGTCATTGGCCATATGAATGACCGTAACATGTATACTGACAAGTTACTGTACAAAAGCGAGTTTCTTAGACTTCATAAGAATCTTTATAGGAGTTTAAAAGCATCGGATGCAAGAACAGAAGCACAAAGCAAAAGGCTTGAGCATGTTCAGGAATTTAGAAAATGGGCCGGTATTGATTAA 2061 0.3736 MVLPFAKYILFQNPFLKKLPPLQIILHGHVNFNQFNTFSQNISTFSDNCERLSWERSTQEILVGKLKFALRNHQLQEALETFRDFRNLYGYPEINLLNQLIVQLCYSSNHVLVRKACDLVLRIVDENSGLIHVDTLTKLALSLARMQMPSPASVILRLMLTKGFVPSMNFLSLIVFHIVKTEIGTHLVSNYLSQVCDFYNGLKDKKAQHAIMLKPDTLVFNLVLDACVRFKLCLKGLCLIELMPLMGTVADAHSIVIISQILEMNGLRDELMELKCHIDGVSASYVRHYRQFYDSLLRLHFKFNDIDAASKLVLDMNSSHNCHNNEEYRNHLQKPSFVAIGSPNLKNALKIHIEPELLQKDTVLKLEGREGLVFYKGGKLTLSNRALAKFIIGYKKDGRISELSKLLLSIHGELYSATGSGLCSDVISACIQMGWLESAHDILDDAEAAGSPMGCDMYILLLSAYQKEEMQREAQALLKQMKKIDFLPELSNDAIDEHVLCRETSNSVGKSDLAVALAQILNAEDQTDIPLVYNFNSSIFFFCKARMIEDALRAYRKMCEMKIRPTNQTFAHLVCGYSSLGMYREITFFWGDIKRFMKNNYLVVNRDLYELLLLNFIRGGYFERVMEVIGHMNDRNMYTDKLLYKSEFLRLHKNLYRSLKASDARTEAQSKRLEHVQEFRKWAGID* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3530 686 PANTHER OS07G0495300 PROTEIN 20 686 - -
Mtr4g3530 686 Gene3D Tetratricopeptide repeat domain 499 684 IPR011990 GO:0005515
Mtr4g3530 686 TIGRFAM PPR: pentatricopeptide repeat domain 542 566 IPR002885 -
Mtr4g3530 686 Pfam PPR repeat 541 562 IPR002885 -
Mtr4g3530 686 Gene3D Tetratricopeptide repeat domain 374 498 IPR011990 GO:0005515
Mtr4g3530 686 Gene3D Tetratricopeptide repeat domain 60 340 IPR011990 GO:0005515
Mtr4g3530 686 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 531 565 IPR002885 -
Mtr4g3530 686 PANTHER BNAC05G43320D PROTEIN 20 686 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3530 Mtr-Chr4 49029031 49032962 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3530 205 644 Glycosyltransferase AT1G05670 22.526 2.46e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3530 - - cam:101501642 1123.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3530 4 49029031 49032962 Mtr4g3530 4 49029031 49032962 ECH