LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr4g3522	ATGACTTTAACACTTCGTTCTTCAATTTCTTTCATCATTCAGAAAGAAACCAAGTTCCTTAAAACCTTTGATGATGTCTCTTCCACTCTCACCTTTGCAAAGATTAAACCATCTTTCCGTCTCAAAGCCAAGAGTTCTATGCAAATAGCACACACCTTCAAGTCTGATGAAAAATGGGAGCAGGTGCATGCTCCATCAATTGTTCATAGTAACCATGATAATTCAAAGAAGGTACCAGTTTTTGTGATGCTTCCATTGGATACAGTAACAATGGGAGGAAACTTGAACAAGCCAAGAGCAATGAATGCTAGTTTGATGGCTTTGAAAAGTGCTGGAGTTGAAGGGGTGATGGTTGATGTTTGGTGGGGTTTGGTTGAAAAAGATGGACCTTTCAAGTATAACTGGGAAGCTTATGCTGAGCTTGTGCAGATGGTGCAATTGCATGGTTTGAAGCTTCAAGTTGTTATGTCTTTTCATCAGTGTGGAGGAAATGTTGGAGATTCCTGCAGTGTTCCTCTACCTCCATGGGTGATGGAAGAGATCAGCAAGAACCCTGACATTGTTTACACAGACAGATCAGGGAGGAGAAATCCTGAGTACATATCATTGGGATGTGATTCAGTGCCTGTTCTAAAAGGAAGAACTCCCCTCCAAGTGTATGCTGACTACATGAGGAGCTTTCGTGACAGATTCAGTGATTACTTGGGCAGTGTCATCTCGGAAATACAAGTAGGAATGGGTCCATGTGGGGAGCTGAGATATCCATCATATCCAGAAAGCAATGGAACTTGGAGGTTTCCTGGAATTGGAGAATTCCAATGTTATGACAAGTATATGAAAGCATCCTTGGCAGCAGCAGCCGAGGCCATCGGAAAGAAGGAATGGGGAGGAGGTGGACCCCATGATTCTGGCCAGTATAATCAGTTTCCGGAGGATACTGGATTTTTCAGAAAAGATGGAACATGGAACTCTGAATATGGACAGTTCTTTCTGGAATGGTACTCCGGTAAATTGCTAGAGCACGGTGATAGGATCCTTGTATCAGCCAAAGAAATATTCCAGACATCTGGTGTGAAACTATCTGGTAAAGTTGCGGGAATCCATTGGCATTACAGATCAAGGTCGCACGCAGCTGAACTAACTGCTGGTTACTATAACACTAGACATAATGATGGGTATCTTCCAATTGCCAAAATGTTTGCAAACCATGACGTTGTCTTCAATTTCACCTGCATGGAAATGAAAGACAGAGAACAACCTGGACATGCTAACTGTTCGCCAGAAGGGTTAGTTCACCAAGTCAAGAAGGCAACAAAAATGGCTAATATAGAACTTGCTGGGGAAAATGCACTGGAGAGATATGATTCAGGTGGATATGCTCAAGTTTTGTCAACAAGTATGTCAGACTCCGGCAGTGGATTGGCTGCATTTACATACTTGAGAATGAACAAGAAGTTGTTTGAAGGTGATAATTGGCGGCACTTAGTGGATTTTGTAAGAAATATGTCTGAAGGCGGTCGGAGACAACGACTTCCAGATTCTGATTCACGCGGAAGTGATATTTATGTTGGGCACATCGAGAAAACTAAGGAGCAAAAACAAGAGGGTGAGGCTATTCTTGTTTGA	1626	0.425	MTLTLRSSISFIIQKETKFLKTFDDVSSTLTFAKIKPSFRLKAKSSMQIAHTFKSDEKWEQVHAPSIVHSNHDNSKKVPVFVMLPLDTVTMGGNLNKPRAMNASLMALKSAGVEGVMVDVWWGLVEKDGPFKYNWEAYAELVQMVQLHGLKLQVVMSFHQCGGNVGDSCSVPLPPWVMEEISKNPDIVYTDRSGRRNPEYISLGCDSVPVLKGRTPLQVYADYMRSFRDRFSDYLGSVISEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMKASLAAAAEAIGKKEWGGGGPHDSGQYNQFPEDTGFFRKDGTWNSEYGQFFLEWYSGKLLEHGDRILVSAKEIFQTSGVKLSGKVAGIHWHYRSRSHAAELTAGYYNTRHNDGYLPIAKMFANHDVVFNFTCMEMKDREQPGHANCSPEGLVHQVKKATKMANIELAGENALERYDSGGYAQVLSTSMSDSGSGLAAFTYLRMNKKLFEGDNWRHLVDFVRNMSEGGRRQRLPDSDSRGSDIYVGHIEKTKEQKQEGEAILV*	542

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr4g3522	541	SUPERFAMILY	(Trans)glycosidases	76	505	IPR017853	-
	Mtr4g3522	541	ProSitePatterns	Beta-amylase active site 1.	159	167	IPR018238	GO:0000272\|GO:0016161
	Mtr4g3522	541	PANTHER	-	1	540	IPR001554	GO:0000272\|GO:0016161
	Mtr4g3522	541	Pfam	Glycosyl hydrolase family 14	81	498	IPR001554	GO:0000272\|GO:0016161
	Mtr4g3522	541	Gene3D	Glycosidases	70	538	-	-
	Mtr4g3522	541	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	112	126	IPR001554	GO:0000272\|GO:0016161
	Mtr4g3522	541	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	133	151	IPR001554	GO:0000272\|GO:0016161
	Mtr4g3522	541	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	155	176	IPR001554	GO:0000272\|GO:0016161
	Mtr4g3522	541	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	247	269	IPR001554	GO:0000272\|GO:0016161
	Mtr4g3522	541	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	322	341	IPR001554	GO:0000272\|GO:0016161
	Mtr4g3522	541	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	358	374	IPR001554	GO:0000272\|GO:0016161
	Mtr4g3522	541	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	375	386	IPR001554	GO:0000272\|GO:0016161
	Mtr4g3522	541	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	393	416	IPR001554	GO:0000272\|GO:0016161
	Mtr4g3522	541	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	430	452	IPR001554	GO:0000272\|GO:0016161
	Mtr4g3522	541	PANTHER	BETA-AMYLASE	1	540	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr4g3522	Mtr-Chr4	48971440	48973956	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr4g3522	1	541	Glycoside Hydrolase	AT4G17090	72.232	0.0	832

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr4g3522	K01177		-	gmx:100818063	940.643

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr4g3522	4	48971440	48973956	Mtr4g3522	4	48971440	48973956	ECH