Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3498 ATGGCCACATCTCTTTCTTCTTCCATCCACATCTCATTCCTTGACACCAAAACAACACGAACAAGGTTCAAATTCCCTCCTACTACTACTACCCTAAAATCTCACAGAAGGTTTCTCATCTCTTCTTCCAAATCCATTCCAGATTCTGAAACCACCCCACCAAACAACAACAACAACAAAAAAAACTCATCTTTATCCGACCAACTTGCTTCTCTTGCAAATACAACGTTATCCACTGTCCCAGAAAACCAACCAAAAGTTTTGTCAAAGCCAAAACCCACATGGGTCAATCCCACTAAGACTAAGCGTCCTGTTTTGTCTCACCAGAGACATAAACGTTCTTCTGTTTCGTATAATCCACAGTTAAGAGAGTTTCAACGGTTTGCTCAGAGATTGAACAACTGTGATGTCTCTTCTTCTGATGAAGAATTTATGGTTTGTTTGGAAGAAATTCCGAGTTCGCTTACGAGGGGAAATGCTCTATTGGTGCTCAATAGTTTGAGGCCATGGCAGAAGACACATATGTTTTTCAATTGGATTAAGACCCAGAATTTGCTTCCTATGGAAACTATATTCTATAATGTTACAATGAAGTCTTTGAGGTTTGGGAGACAGTTTGGGATTATAGAAGAGCTTGCACACCAGATGATTGATGGTGGGGTTGAATTGGATAACATTACATATTCTACAATCATATCTTGTGCTAAGAAATGTAATCTTTTTGATAAAGCTGTGTATTGGTTTGAGAGGATGTACAAGACTGGATTGATGCCGGATGAGGTAACTTTCTCAGCTATTTTAGATGTTTATGCTAGGTTAGGTAAGGTTGAAGAAGTTGTCAATTTGTTTGAGAGAGGGAGAGCAACCGGGTGGAAGCCTGATCCAATCACGTTTTCCGTGTTGGGGAAGATGTTTGGGGAGGCTGGGGATTATGATGGGATTAGATATGTTTTGCAGGAGATGAAATCTTTAGGGGTGCAACCTAATTTAGTTGTGTATAATACCTTGTTGGAAGCAATGGGAAAGGCGGGGAAGCCGGGGTTTGCGAGGAGTTTGTTTGAGGAAATGATTGACTCAGGGATTGCCCCAAATGAGAAGACTCTAACGGCGGTTATTAAGATATATGGAAAGGCAAGGTGGTCTAAAGATGCTTTGGAATTGTGGAAAAGGATGAAGGAGAATGGTTGGCCTATGGATTTTATATTGTATAATACATTGTTGAATATGTGTGCAGATGTTGGATTAATTGAAGAAGCTGAAACTTTGTTTAGGGATATGAAACAATCTGAGCATTGCAAGCCAGATAGTTGGAGTTACACTGCTATGCTAAACATATATGGGAGTGAAGGAGCTGTGGATAAGGCAATGAAATTGTTTGAAGAGATGTCTAAGTTTGGTATTGAACTCAATGTGATGGGGTGCACTTGTTTGATTCAGTGCTTGGGAAAGGCCATGGAAATTGATGATCTGGTCAAAGTTTTTGACATTTCAGTTGAGAGAGGAGTTAAGCCAGATGATAGGCTTTGTGGTTGTTTGCTATCTGTCGTGTCTCTTTCTCAAGGTAGCAAGGATCAAGAAAAAGTCCTTGCTTGTTTGCAACGAGCTAACCCAAAATTGGTTGCCTTCATTCAACTAATTGTAGACGAGGAAACTAGTTTTGAGACTGTCAAAGAAGAGTTTAAGGCTATCATGAGTAATGCAGTGGTTGAGGTGAGAAGACCCTTCTGTAACTGCCTGATTGACATATGTAGAAACAAAGATCTCGTAGAGAGAGCCCACGAGTTGCTCTACCTAGGGACTTTATATGGATTCTACCCAAGTTTGCACAACAAAACACAATATGAATGGTGTTTAGATGTTCGAACATTGTCAGTTGGGGCAGCTCTAACTGCACTTGAAGAGTGGATGACTACACTCACCAAAATTGTTAAGCGGGAGGAGGCATTACCAGACTTATTTCTAGCACAAACAGGTACCGGTGCTCATAAGTTTGCACAAGGACTCAATATTTCTTTTGCATCTCATTTGAGAAAGTTGGCTGCTCCATTTAGACAAAGTGAAGATAAAGTTGGTTGTTTTATTGCAACAAAAGAGGATTTAATCTCTTGGGTGCAGTCAAACTCTCCATCGGCATCTATTGCAACATAA 2148 0.4022 MATSLSSSIHISFLDTKTTRTRFKFPPTTTTLKSHRRFLISSSKSIPDSETTPPNNNNNKKNSSLSDQLASLANTTLSTVPENQPKVLSKPKPTWVNPTKTKRPVLSHQRHKRSSVSYNPQLREFQRFAQRLNNCDVSSSDEEFMVCLEEIPSSLTRGNALLVLNSLRPWQKTHMFFNWIKTQNLLPMETIFYNVTMKSLRFGRQFGIIEELAHQMIDGGVELDNITYSTIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVYARLGKVEEVVNLFERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKRMKENGWPMDFILYNTLLNMCADVGLIEEAETLFRDMKQSEHCKPDSWSYTAMLNIYGSEGAVDKAMKLFEEMSKFGIELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVKPDDRLCGCLLSVVSLSQGSKDQEKVLACLQRANPKLVAFIQLIVDEETSFETVKEEFKAIMSNAVVEVRRPFCNCLIDICRNKDLVERAHELLYLGTLYGFYPSLHNKTQYEWCLDVRTLSVGAALTALEEWMTTLTKIVKREEALPDLFLAQTGTGAHKFAQGLNISFASHLRKLAAPFRQSEDKVGCFIATKEDLISWVQSNSPSASIAT* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3498 715 Gene3D Tetratricopeptide repeat domain 305 414 IPR011990 GO:0005515
Mtr4g3498 715 Gene3D Tetratricopeptide repeat domain 415 534 IPR011990 GO:0005515
Mtr4g3498 715 Gene3D Tetratricopeptide repeat domain 152 304 IPR011990 GO:0005515
Mtr4g3498 715 PANTHER OS03G0856100 PROTEIN 33 708 - -
Mtr4g3498 715 MobiDBLite consensus disorder prediction 77 113 - -
Mtr4g3498 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 399 433 IPR002885 -
Mtr4g3498 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 259 293 IPR002885 -
Mtr4g3498 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 328 IPR002885 -
Mtr4g3498 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 224 258 IPR002885 -
Mtr4g3498 715 SUPERFAMILY HCP-like 241 467 - -
Mtr4g3498 715 MobiDBLite consensus disorder prediction 37 64 - -
Mtr4g3498 715 PANTHER OS03G0856100 PROTEIN 33 708 - -
Mtr4g3498 715 SMART SMR_2 615 698 IPR002625 -
Mtr4g3498 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 363 IPR002885 -
Mtr4g3498 715 Pfam Pentatricopeptide repeat domain 457 504 IPR002885 -
Mtr4g3498 715 Pfam Pentatricopeptide repeat domain 212 270 IPR002885 -
Mtr4g3498 715 Pfam PPR repeat family 401 444 IPR002885 -
Mtr4g3498 715 Pfam PPR repeat family 328 373 IPR002885 -
Mtr4g3498 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
Mtr4g3498 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 364 398 IPR002885 -
Mtr4g3498 715 ProSiteProfiles Smr domain profile. 618 701 IPR002625 -
Mtr4g3498 715 TIGRFAM PPR: pentatricopeptide repeat domain 438 471 IPR002885 -
Mtr4g3498 715 TIGRFAM PPR: pentatricopeptide repeat domain 331 365 IPR002885 -
Mtr4g3498 715 TIGRFAM PPR: pentatricopeptide repeat domain 402 435 IPR002885 -
Mtr4g3498 715 TIGRFAM PPR: pentatricopeptide repeat domain 226 260 IPR002885 -
Mtr4g3498 715 TIGRFAM PPR: pentatricopeptide repeat domain 367 399 IPR002885 -
Mtr4g3498 715 TIGRFAM PPR: pentatricopeptide repeat domain 261 294 IPR002885 -
Mtr4g3498 715 TIGRFAM PPR: pentatricopeptide repeat domain 474 505 IPR002885 -
Mtr4g3498 715 Pfam PPR repeat 296 326 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3498 Mtr-Chr4 48604057 48606791 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3498 193 529 Glycosyltransferase AT1G05670 25.294 1.72e-27 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3498 - - gmx:100780994 1127.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3498 4 48604057 48606791 Mtr4g3498 4 48604057 48606791 ECH