Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3187 ATGGCAAGTAAACAACATAGATGTAACCAATGTGGAACAATGCTGGTGGTTCCAATAGAAGTCCAAGCCTTTAAATGTTCAATGTGCAATGGCATCACACATGTTCAATCCATAAATCAAGCCTATAACTCTCTTAATCATATTGCAGGTCTATTTAGAGGCTTCATGAATACTATAACAACTAGCTCAGCAATTAACAGCAACTCAAGTAATTATGGGACAACTCATTTTGGGTATTATCATCAGCCTCAGCCACTAAGGCCTTCATACCCTTTGATTCCTCCTTCTCCATATGGTTCCAAAAGGGCAGTTTTGTGTGGAATTTGCTACCATGGGAGGAGTTACAAGCTTAAGGGCTCCATCAATGATGTAAAGTGTATGAAGTACTTTCTGATTAAGGAGTTTGGGTTTCCAAGTGACTCCATTCTCATCCTCACAGATGATAGGGAAGAAAGAAATCCACTAAAAATACCTACGAAATATAATATTCAAATGGCTTTAAGGTGGTTGATGGAGGGTAGCAAATCAGGGGACTCATTGGTGTTCCATTACTCAGGACATGGCACACAGGAAGTGAACATGAATGAGATTGATGATAGGTATGATAATGCAATTTGTCCTGTTGATCATGAGCACAAGGGGAAGATGCTGAATAATGAGATTAATGCAACAATTGTTAGGCCACTACCATTTGGTGCTAAACTTCATGCCATTATTGATGCATGTCACAGTGGGAATGTTCTTGATTTATCATTTGTGTGCAAGATGAACAGGGAAGGGTATTATACATGGGAGGATAATACAAATTCAAGAAATTATGAAGGCACAAAAGGAGGGGTAGCAATTTGTATTTCAGCTTGTGATGATGATCAAGTCTCTGTAGATACCTCGGCCTTAAGTGGAAAAGAAGTTACAGGTGCCTTGACTTATAGTTTCATCCAAACAGTGCAAAATGAACCTGGATTGACCTATGGTCACTTGCTTAGTACCATGCGTTCTACCATTCATGGCACTAAAACAGGCATAGTTGCTCTAAATGGTCCAATTGCTTCATTTTTAAATAAACTACTTGGCCTCCGCATCAAACAGGAGGCACAATTATCATCCTCGGAGTTGTTTGACATGTATAAAAAGCAGTTTATACTATGA 1149 0.3899 MASKQHRCNQCGTMLVVPIEVQAFKCSMCNGITHVQSINQAYNSLNHIAGLFRGFMNTITTSSAINSNSSNYGTTHFGYYHQPQPLRPSYPLIPPSPYGSKRAVLCGICYHGRSYKLKGSINDVKCMKYFLIKEFGFPSDSILILTDDREERNPLKIPTKYNIQMALRWLMEGSKSGDSLVFHYSGHGTQEVNMNEIDDRYDNAICPVDHEHKGKMLNNEINATIVRPLPFGAKLHAIIDACHSGNVLDLSFVCKMNREGYYTWEDNTNSRNYEGTKGGVAICISACDDDQVSVDTSALSGKEVTGALTYSFIQTVQNEPGLTYGHLLSTMRSTIHGTKTGIVALNGPIASFLNKLLGLRIKQEAQLSSSELFDMYKKQFIL* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3187 382 SUPERFAMILY Cysteine-rich domain 5 40 IPR046349 -
Mtr4g3187 382 Pfam LSD1 zinc finger 8 31 IPR005735 -
Mtr4g3187 382 PANTHER METACASPASE-4 2 380 - -
Mtr4g3187 382 SUPERFAMILY Caspase-like 88 249 IPR029030 -
Mtr4g3187 382 Pfam Caspase domain 101 374 - -
Mtr4g3187 382 Gene3D - 29 382 - -
Mtr4g3187 382 PANTHER ICE-LIKE PROTEASE (CASPASE) P20 DOMAIN PROTEIN 2 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3187 Mtr-Chr4 45318628 45320950 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3187 K22684 - gmx:100783197 561.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3187 4 45318628 45320950 Mtr4g3187 4 45318628 45320950 ECH
Mtr4g3187 4 45318628 45320950 Mtr2g0170 2 1724908 1726794 PCT