Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3140 ATGGCTTCTTCATTCTTGCTCAAACTCGTTTTCAAATCCCTTCATCACTTCGCATGGTGTGCTTCCATACAAGCTATCGAGACCGATTCTGATGCAGAAATTAAGAATATAATCTCATATTGGATACTTCTTTCATTAATTTACCTATTTGAGTATGCTTTTATGAGCCTTCTTCTATGGTTTCACCTCTGGCCGTACATTAAGCTAATGATCATCTTCTGTCTCATCATACCAGACTTTGGACGAGCTTCATATGTTTATAATAACCTCATTCGCCCCATGAAACTGCAAATAGTCTCATGGAGGTTAAATAACTACTGGAGGAAGTGTTTTGTTGAGAAAGATGACTTTTTAATGCATGCAGAGAGATATATGCAAGAGAACGGAACTGAAGCCTTAGAGAAACTCATTGCTAGCAAGAACACAATGTGTAGGCCTGAAGTGACAAATGAAATCATAGCTACTGATAATAAAGAAATGCTAAAGTCAAATGCAGAAAGACTCCAAATTGAGCACAAAGACATCAAAGACTCGGACGCTGTTGAGAAAAAAGTACTTCCTGCTTTCAAGCAAGATATTCCTGTCTTGCCGAAAATTGGGCCAAGTCAAAATGCATCATTAGCCACAGTGGAAACCAATGTAACAGCAGAAAGAAACAGCGCTGGTGGAGAGGTTCCTCAGAGTTCTACTTCTACACAGAAGGAAGTGCAGAAAGAGTGGACTTGTGCTTTATGTTTGGTAACAACAACGAGTGAGAAAATCTTGAATTCCCACCTGAGTGGAAAGAAACACAGAGCTGCTCTTCAGAGGCAAAAGGATGCAGAGACAAATGGAGAAAGGATCCTAACAGAACACAAAATTATCAAAGATCTCGATGCTGTTGAGAAAAAAGAAATTCATGAAACCAAGCAGGATATTCCTGTCATACCTAAAATTGGGCCAAGTCAAAATGAATCATCAGCCTCAGTGGAAACCAAAGGAACAGTAGAGGGGGACAGGGCTGGTGGAGAGGTTCCTCAGAGTTCTTCTATGCAGATGGATTTGCAGAAAGACCGGACTTGTGATTTATGTTTGACAACAGCAGAGGAAATCTTGAATGCCCGCTTCAGTGGAAGGAAACACAGTGCTGCTCTGCAGAAGCAAAAGGATGCAGAAGCGATAAATGAAATCACAACTACTGATAATAAAGAAATACTAAAGGGGACAAATGGAGATAGACTCCAAACAGAACACAAAGACATCAAAGATTTGGAGGCTATTGAGGAAAAAGAGATTCCTGCAACCAAACAAGATATCCTCATGCCTAAAATTTGGCCAAGTCAAATGCATCGTCAGCCACAGTGGAAACCAATGGAACAGCAGAGTGACACAGTTGGTGTAGAGGTTCCACAGAGTTCTACTATTGCGCAAAAGGAAGTGCAGAAAGAGTGGGCATGTGCTTTATGTTTGGTAACAGTTCCATGTGAAAAAACATTGAATTCCCATCTTAATGGGAGGAAACACAGAGCTGCTTGTGAAGCAGCTTTGAAAGCAAAGAAGCTAAAAATCTACAAGGCCAAAGAGGAGGTGAAACAGGAGAATTTTAGCAATAAGTTAAATTCTGATGTTGAGAATGGAGGTGGTATTGTTAACAACAGGTTGAAGGGACCAGTAAGGATGCAAAAGCTCCATTTCATAGGACCCACACCTTCTCCACAAGCTCTCAGTGGACCAACACCTTTCGGTGGACCAACATCATCCCCAATAAGAGTTCCATTTTCATATCATAGAGGACCAACACCTTTCAGAGGACCGGCGCCTTTTGGAGGACCAACGCCACCTCCAATAAGAGTTCCATTTTCATATCATGGATCAGATGGATCATGGGCACGTCAACCAGAGTTCACGTATTTCATTCCAACTCCTCCTAGGTTGCCACCTCTGGAACCAAACAGTCGTTGA 1941 0.4158 MASSFLLKLVFKSLHHFAWCASIQAIETDSDAEIKNIISYWILLSLIYLFEYAFMSLLLWFHLWPYIKLMIIFCLIIPDFGRASYVYNNLIRPMKLQIVSWRLNNYWRKCFVEKDDFLMHAERYMQENGTEALEKLIASKNTMCRPEVTNEIIATDNKEMLKSNAERLQIEHKDIKDSDAVEKKVLPAFKQDIPVLPKIGPSQNASLATVETNVTAERNSAGGEVPQSSTSTQKEVQKEWTCALCLVTTTSEKILNSHLSGKKHRAALQRQKDAETNGERILTEHKIIKDLDAVEKKEIHETKQDIPVIPKIGPSQNESSASVETKGTVEGDRAGGEVPQSSSMQMDLQKDRTCDLCLTTAEEILNARFSGRKHSAALQKQKDAEAINEITTTDNKEILKGTNGDRLQTEHKDIKDLEAIEEKEIPATKQDILMPKIWPSQMHRQPQWKPMEQQSDTVGVEVPQSSTIAQKEVQKEWACALCLVTVPCEKTLNSHLNGRKHRAACEAALKAKKLKIYKAKEEVKQENFSNKLNSDVENGGGIVNNRLKGPVRMQKLHFIGPTPSPQALSGPTPFGGPTSSPIRVPFSYHRGPTPFRGPAPFGGPTPPPIRVPFSYHGSDGSWARQPEFTYFIPTPPRLPPLEPNSR* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3140 646 Gene3D Classic Zinc Finger 224 272 - -
Mtr4g3140 646 Gene3D Classic Zinc Finger 454 507 - -
Mtr4g3140 646 SMART ZnF_U1_5 349 381 IPR003604 GO:0003676|GO:0008270
Mtr4g3140 646 SMART ZnF_U1_5 237 271 IPR003604 GO:0003676|GO:0008270
Mtr4g3140 646 SMART ZnF_U1_5 474 508 IPR003604 GO:0003676|GO:0008270
Mtr4g3140 646 Coils Coil 158 178 - -
Mtr4g3140 646 Pfam TB2/DP1, HVA22 family 20 94 IPR004345 -
Mtr4g3140 646 MobiDBLite consensus disorder prediction 308 347 - -
Mtr4g3140 646 PANTHER HVA22-LIKE PROTEINS 1 271 IPR004345 -
Mtr4g3140 646 PANTHER HVA22-LIKE PROTEINS 274 381 IPR004345 -
Mtr4g3140 646 PANTHER HVA22-LIKE PROTEINS 385 528 IPR004345 -
Mtr4g3140 646 Pfam Zinc-finger of C2H2 type 477 501 - -
Mtr4g3140 646 Pfam Zinc-finger of C2H2 type 240 264 - -
Mtr4g3140 646 SUPERFAMILY beta-beta-alpha zinc fingers 469 509 IPR036236 -
Mtr4g3140 646 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 274 381 - -
Mtr4g3140 646 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 385 528 - -
Mtr4g3140 646 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 1 271 - -
Mtr4g3140 646 SUPERFAMILY beta-beta-alpha zinc fingers 222 272 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3140 Mtr-Chr4 44905003 44910777 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3140 - - mtr:MTR_4g093260 1199.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3140 4 44905003 44910777 Mtr4g3140 4 44905003 44910777 ECH