Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3109 ATGGATTATCAGTATATTCTTGGAGGGATTCTGGCTTGTAGTTTGGCATTTGTGTTTGTTGTGTATGGTTTTGGAGAAAAGAAGAAAACAGGTTCAAGTTCAATGGATGTGAAAAGTAATGGATATGCAAAGACATCATCAGAAAATGGAATTTGCTCACAAGAGATTGTTGGAGAAACAGATATCATCATTGTAGGTGCTGGAGTTGCTGGTGCTGCTCTTGCCTATACACTTGGAAAGGATGGACGGCGAGTACACGTGATTGAAAGAGACTTAACTGAGCCTGATAGAATTGTGGGTGAATTGCTTCAACCTGGTGGCTATCTGAAGTTACTTGAGTTAGGTCTTGAGGATTGTGTGGATGAAATTGATGCTCAAAGAGTGTTTGGCTATGCACTTTATAAGGATGGGAAAAATACCAAACTGTCTTATCCCTTGGAAAAGTTCGACTCTGATGTATCTGGAAGAAGTTTTCACAATGGTCGTTTCATACAGAGAATGCGAGAAAAGGCTTCAACTATTCCAACTGTTAAATTAGAACAAGGAACCGTTACATCGTTACTTGAAGAAAATGGAACTATCAAAGGTGTGAACTACAAAAATAAGAGTGGTCAAGAGTTCACAGCAAAGGCTCCTCTCACCATAGTATGTGATGGTTGTTTTTCCAACTTGAGGCGTTCTCTTTGTAATCCTAAGGTTGAAGTTCCCTCTCATTTTGTTGGATTGATTTTGGAGAATTGTAATCTTCCACATGCAAATCATGGACATGTTATCTTGGGTGATCCTTCACCAATTTTGTTTTACCCTATAAGTAGTACCGAGATTCGTTGTTTGGTTGATGTGCCTACTGGCCAAAAATTACCTTCTCTTGGTAATGGTGAAATGGCAAATTATTTGAAAACTGTGGTAGCTCCCCAGGTTCCTCCTGAACTGCATGCTTCTTTTATTGCAGCAGTTGATAAAGGAAACATAAGAAGCATGCCAAATAGAAGCATGCCTGCATCACCTTATCCCACCCCTGGGGCTCTTCTGATGGGAGATGCCTTCAATATGCGTCATCCTTTAACAGGAGGAGGAATGACTGTGGCTTTGTCTGACATTGTTTTGCTAAGGAATCTACTTAAACCTCTGCGTAATCTGCATGATGCTTCTGCTCTTTGCATTTACCTCGAGTCATTCTACACCCTACGCAAGCCAGTGGCATCTACAATAAACACATTAGCAGGTGCATTGTACAAAGTGTTTTGTGCATCTCCTGATCCAGCTAGCATTGAAATGCGCCGAGCATGTTTTGATTATTTGAGCCTCGGAGGTGTTTGCTCAGATGGGCCAATAGCTCTACTCTCCGGTCTGAATCCGCGTCCATTGAGCTTGGTTCTACATTTCTTCGCGGTGGCTGTATTCGGTGTTGGCCGCCTCTTGATACCATTTCCTTCTCCAAAACGAATGTGGATCGGAGCTAGATTGATTTCTGGTGCATCAGGTATTATTTTCCCCATTATCAAGGCTGAAGGAGTGAGACAAATGTTTTTTCCAGCAAGTGTGCCAGCATATTACAGAATGCCTCCTGTCCATTAA 1578 0.4176 MDYQYILGGILACSLAFVFVVYGFGEKKKTGSSSMDVKSNGYAKTSSENGICSQEIVGETDIIIVGAGVAGAALAYTLGKDGRRVHVIERDLTEPDRIVGELLQPGGYLKLLELGLEDCVDEIDAQRVFGYALYKDGKNTKLSYPLEKFDSDVSGRSFHNGRFIQRMREKASTIPTVKLEQGTVTSLLEENGTIKGVNYKNKSGQEFTAKAPLTIVCDGCFSNLRRSLCNPKVEVPSHFVGLILENCNLPHANHGHVILGDPSPILFYPISSTEIRCLVDVPTGQKLPSLGNGEMANYLKTVVAPQVPPELHASFIAAVDKGNIRSMPNRSMPASPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVLLRNLLKPLRNLHDASALCIYLESFYTLRKPVASTINTLAGALYKVFCASPDPASIEMRRACFDYLSLGGVCSDGPIALLSGLNPRPLSLVLHFFAVAVFGVGRLLIPFPSPKRMWIGARLISGASGIIFPIIKAEGVRQMFFPASVPAYYRMPPVH* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3109 525 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 525 - -
Mtr4g3109 525 SUPERFAMILY FAD/NAD(P)-binding domain 59 436 IPR036188 -
Mtr4g3109 525 Pfam NAD(P)-binding Rossmann-like domain 64 90 - -
Mtr4g3109 525 Gene3D - 55 426 IPR036188 -
Mtr4g3109 525 Pfam Squalene epoxidase 210 484 IPR013698 GO:0004506|GO:0016021|GO:0050660
Mtr4g3109 525 PANTHER SQUALENE MONOOXYGENASE 1 525 IPR040125 GO:0004506|GO:0016126
Mtr4g3109 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 61 83 - -
Mtr4g3109 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 210 225 - -
Mtr4g3109 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 339 354 - -
Mtr4g3109 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 354 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3109 Mtr-Chr4 44666177 44670285 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3109 22 523 Miscellaneous Gene Families AT1G58440 77.976 0.0 805
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3109 K00511 - gmx:100800329 917.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3109 4 44666177 44670285 Mtr4g3109 4 44666177 44670285 ECH