Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2834 ATGGCACAAGCACAACGTGAAGAGAAGATTCATCATGAGAAGAATCAAGAAAAAGATCATGTTCAAGAGACAAGCAATTCAAGCTTCAAATTCAATGTTCAAGCGCCTGAATTCGTGCCGAGATCGCATTCTCAAATGCCGATTTCGGGTTATTTCTATCCTTGCTTTCAGATTCTTGGTGGTTCTGGTGAATCTGATTGGTTCTACGTTGGTGATCAAGATCCTTCTGCATGTTTGATCCCTAATGCTAATGTTTCGCAACCCAATTGTTCCAAGAATGTGCTCAACCCTGACCTTCAACAGAAGATTGTTAAACAGGTGGAGTATCAGTTCAGTGACCTGAGCTTGCTAGCAAATGAATCTTTCCAGAAACAGATGAATAAGGATCCTGAAGGTTATGTTCCAATTACTGTGATTGCTTCCACAAAAAAGATCAAGTCACTTGTTAACAACATTCATCTGCTTACACAAGCTATTCGCCATTCTTCAAAACTTGTTTTGAGTGCTGATGGCAAGAAGGTTAAACGAAAACATCCTTTCGCTGAAAAGGAGAAAGAGGAATTAATGTCTCGGACTGTTGTGGCAGAGAATTTACCTGACGATCATTCCCATCAAAATCTTCAGAAAATATTTGGCGTAGTTGGGAGCATCAAAACAATCAGAATATGCCATCCCCAAGAACCGAATTCTTCTCGCCCGAAAGGTGATTTCCTCATCAGTAACAAGCTACATGCACTTGTGGAGTATGAATCATCGGATGTTGCTGACAAAGCTGTTGAGAAATTAAACGATGAAAGGAACTGGAGGAAAGGGATGCGAGTAAGGTTGCTGCTTAGATGCTCGCCAAAATCTGTTTTGAAGAATAGAAAGTCAGAATTCGATGGCTATCTTGATGACGATGAGAATCTACATTCTGAAACTGCTGAAGATTCTTCTCATCCAAACAACACTGAATTATGTGTTGAGAGTAATGGTGATGAAACTTCAGTCGGATCAAAGAAAGGATGGACTAGAGGTCGAGGAAAGGGAAGAGGACGCACTCAAAACCATACCGGACGTGGCCTACTTGCCCCACCATCTCCATCAAGCAGTGTTGTCCTGGGTGAAGTGTCGACTAAACCCAATGCAAAGGGCCCTAGAATGCCAGATGGAACAAGAGGTTTCGCCATCGGACGAGGCAAACCGATTAGTTCTCCCACTTCACCTCAGGAGTAA 1215 0.4239 MAQAQREEKIHHEKNQEKDHVQETSNSSFKFNVQAPEFVPRSHSQMPISGYFYPCFQILGGSGESDWFYVGDQDPSACLIPNANVSQPNCSKNVLNPDLQQKIVKQVEYQFSDLSLLANESFQKQMNKDPEGYVPITVIASTKKIKSLVNNIHLLTQAIRHSSKLVLSADGKKVKRKHPFAEKEKEELMSRTVVAENLPDDHSHQNLQKIFGVVGSIKTIRICHPQEPNSSRPKGDFLISNKLHALVEYESSDVADKAVEKLNDERNWRKGMRVRLLLRCSPKSVLKNRKSEFDGYLDDDENLHSETAEDSSHPNNTELCVESNGDETSVGSKKGWTRGRGKGRGRTQNHTGRGLLAPPSPSSSVVLGEVSTKPNAKGPRMPDGTRGFAIGRGKPISSPTSPQE* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2834 404 CDD RRM_La_like_plant 191 278 IPR034878 GO:0003723
Mtr4g2834 404 SMART la 97 177 IPR006630 -
Mtr4g2834 404 PANTHER LUPUS LA PROTEIN-RELATED 4 397 IPR045180 -
Mtr4g2834 404 PANTHER LA-RELATED PROTEIN 6C 4 397 - -
Mtr4g2834 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 276 IPR000504 GO:0003723
Mtr4g2834 404 SUPERFAMILY RNA-binding domain, RBD 175 278 IPR035979 GO:0003676
Mtr4g2834 404 SMART rrm1_1 192 277 IPR000504 GO:0003723
Mtr4g2834 404 Gene3D - 96 181 IPR036388 -
Mtr4g2834 404 MobiDBLite consensus disorder prediction 309 331 - -
Mtr4g2834 404 MobiDBLite consensus disorder prediction 1 24 - -
Mtr4g2834 404 MobiDBLite consensus disorder prediction 353 370 - -
Mtr4g2834 404 SUPERFAMILY "Winged helix" DNA-binding domain 96 180 IPR036390 -
Mtr4g2834 404 MobiDBLite consensus disorder prediction 1 26 - -
Mtr4g2834 404 Pfam La domain 103 160 IPR006630 -
Mtr4g2834 404 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 264 IPR000504 GO:0003723
Mtr4g2834 404 ProSiteProfiles La-type HTH domain profile. 93 184 IPR006630 -
Mtr4g2834 404 Gene3D - 182 278 IPR012677 -
Mtr4g2834 404 Pfam Ataxin-2 C-terminal region 27 43 IPR009818 -
Mtr4g2834 404 PRINTS Lupus La protein signature 106 123 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Mtr4g2834 404 PRINTS Lupus La protein signature 132 147 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Mtr4g2834 404 PRINTS Lupus La protein signature 163 176 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Mtr4g2834 404 PRINTS Lupus La protein signature 185 201 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Mtr4g2834 404 MobiDBLite consensus disorder prediction 295 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2834 Mtr-Chr4 41996766 42000046 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2834 K15191 - gmx:100796786 594.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2834 4 41996766 42000046 Mtr4g2834 4 41996766 42000046 ECH