Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2807 ATGGCGACTTTTCCATTGATTCATCGCGCACGAACCACAATGCTTTCTTCATCTTCTTCCTTTTTTTCTTTGAAGCTACGTTCAAACTATATCCATGGCAACCACTTCTGCAAAACCTTGAGTACTTCTGCAATCCCAAACGAGTATGGTAGATTGCCTCCTCATCAGGTTCAGCAACCACCCTCTGATCACAATCAACATTTCAATCATCACAATACTCAAAATGCCCCTGGTCGATTTCCTCAACAGGATTGGAACCCTCAAAACCCTAATTTCCGACCACCACAGCCTCCTCAAAACCCTAATTACCGGCAACAACCACCTCCGCAAAACCCTAATTTCCGACCACCACCTCCTCCTCAAAACCCTAATTTCCGACCACCACCACCCCCGCAAAACCCTAATTTCCGGCAACCCATTCGTCAAAATCCTAATTTTCAGCCACCCAATGGTCCCAATCGAGGGATTAACCAGAATCAGTGGAACCCACAAAATGGTAACCTTAATCAATTTCAAAACCCTAATAACCAATTCCAAACCCCTAATGTTCAGGAACAAGCTCCTCCGCCTCCTTCGATTGTTGATTTGACACGTTTTTGTCAAGAGGGAAAGGTGAAAGAGGCGCTTGAATTGATGGAAAAAGGTATTAAAGCTGATGCTAATTGCTTTGAGATTTTGTTTGATTTGTGTGGTAAGTCGAAATCCGTTGAGGATGCTAAGAAAGTTCATGATTACTTTTTGCAATCTACTTTTAGGAGTGATTTCAAGATGCATAACAAGGTGATTGAAATGTATGGGAATTGTAAAAGTATGACTGATGCACGTAGGGTGTTTGATCATATGCCTAATAGAAATATGGATTCTTGGCATATGATGATTCGTGGCTATGCGAATAGTACTATGGGTGATGAGGGTTTGCAGTTGTTTGAGCAGATGAATGAGCTGGGTTTGGAGATAACTTCAGAGACTATGCTTGCAGTGTTATCGGCTTGTGGAAGTGCAGAGGCTGTGGAGGATGCTTACATATATCTTGAATCAATGAAAAGTAAGTATGGAATTGAACCCGGGGTAGAGCACTATATGGGGCTTTTGGATGTTCTCGGTCAATCTGGATACCTCAAAGAAGCTGAGGAGTTTATTGAGCAACTGCCATTTGAGCCTACTGTGACAGTATTCGAGACCCTTAAGAATTATGCTCGAATTCATGGAGATGTTGATCTTGAAGATCATGTTGAAGAGTTGATTGTTAGTCTTGACCCTTCAAAGGCCGTTGCCAATAAGATCCCTACCCCGCCTCCCAAAAAGTATACCGCAATCAGCATGCTGGATGGCAAGAACAGAATCATTGAGTATAAGAATCCTACTCTTTACAAAGATGATGAGAAGTTGATTGCTATGAATAGTATGAAAGACGCGGGATATGTTCCTGATACAAGATATGTTCTTCATGACATTGATCAGGAAGCAAAGGAGCAGGCCTTGCTCTACCACAGTGAGCGTCTAGCAATTGCCTATGGTCTTATTAGTACTCCTCCTAGAACACCTCTTAGGATTATCAAGAACCTTCGTGTCTGTGGTGACTGTCACAATGCCATCAAGATCATGTCTAGGATTGTAGGGAGGGAACTGATTGTTAGAGATAACAAAAGGTTTCATCATTTCAAGGATGGAAAATGCTCTTGTGGGGATTACTGGTGA 1698 0.4229 MATFPLIHRARTTMLSSSSSFFSLKLRSNYIHGNHFCKTLSTSAIPNEYGRLPPHQVQQPPSDHNQHFNHHNTQNAPGRFPQQDWNPQNPNFRPPQPPQNPNYRQQPPPQNPNFRPPPPPQNPNFRPPPPPQNPNFRQPIRQNPNFQPPNGPNRGINQNQWNPQNGNLNQFQNPNNQFQTPNVQEQAPPPPSIVDLTRFCQEGKVKEALELMEKGIKADANCFEILFDLCGKSKSVEDAKKVHDYFLQSTFRSDFKMHNKVIEMYGNCKSMTDARRVFDHMPNRNMDSWHMMIRGYANSTMGDEGLQLFEQMNELGLEITSETMLAVLSACGSAEAVEDAYIYLESMKSKYGIEPGVEHYMGLLDVLGQSGYLKEAEEFIEQLPFEPTVTVFETLKNYARIHGDVDLEDHVEELIVSLDPSKAVANKIPTPPPKKYTAISMLDGKNRIIEYKNPTLYKDDEKLIAMNSMKDAGYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPPRTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2807 565 PANTHER OS07G0578800 PROTEIN-RELATED 6 560 IPR045215 GO:0003723|GO:0009451
Mtr4g2807 565 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Mtr4g2807 565 TIGRFAM PPR: pentatricopeptide repeat domain 288 320 IPR002885 -
Mtr4g2807 565 MobiDBLite consensus disorder prediction 88 137 - -
Mtr4g2807 565 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 6 560 - -
Mtr4g2807 565 MobiDBLite consensus disorder prediction 58 87 - -
Mtr4g2807 565 MobiDBLite consensus disorder prediction 47 191 - -
Mtr4g2807 565 Pfam PPR repeat 288 317 IPR002885 -
Mtr4g2807 565 Pfam PPR repeat 199 214 IPR002885 -
Mtr4g2807 565 Pfam DYW family of nucleic acid deaminases 473 565 IPR032867 GO:0008270
Mtr4g2807 565 MobiDBLite consensus disorder prediction 138 183 - -
Mtr4g2807 565 Gene3D Tetratricopeptide repeat domain 194 351 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2807 Mtr-Chr4 41737729 41739949 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2807 210 565 Glycoside Hydrolase AT3G49170 35.733 7.55e-69 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2807 - - lang:109333233 754.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2807 4 41737729 41739949 Mtr4g2807 4 41737729 41739949 ECH