Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2608 ATGAGTATTAGTGTTACTAATACCATTATTCTTTTCTTTATAACCCAACTCCTTGTAAGAGCAGAATCAATTACCAGAGGAGATTTTCCAGAGGGCTTTATCTTTGGAACTGCTTCTTCAGCTCACCAGTTTGAGGGAGCTGCTGATGAAGGAAATAAAGGAGATAGCATATGGGACACTTTCTCAAGAATACCAGGAAGAATTTTGGACTTCAGTAATGCAAATATGGCAGTGGATCAGTATCACCGATTTCAGAATGACATAAACTTGATGAAAGATTTGGGAATGGATTCTTATAGATTTTCCATATCATGGCCAAGAATTTTCCCAAATGGAACAGGGGAACCAAATACAGAGGGAATAAAATATTACAACACCCTCATTGATGCTTTATTAGAAAAAGGAATCCAGCCTTTTGTAACTCTATATCATTGGGATCTTCCACAGATGCTGGAAGATAAATATGAAGGATGGTTAAGTACACAAATAATAAAAGATTTTGAGCATTATGCCTATACATGCTTCAAAGCTTTTGGAGACAGAGTTAAGCACTGGATTACCTTCAATGAACCTCACAACTTTGCCCTCCATGGTTATGATTTAGGCATTCAAGCACCAGGAAGATGTTCCCTTCTTGGTCATCTTGTATGTAAGAAGGGAAAATCGTCCACTGAACCTTACATTGTTGCTCATAACATTCTCTTATCCCATGCTGCTGCCTATAGAAGTTACCAACTACATTTCAAGGAAAAACAAGGAGGTAAAATAGGGATAGCACTAGATGCTGTTTGGTATGAACCTATAACTGAACTTGATGAAGACAAAGAAGCAGCAGCTAGAGCTATGGACTTTTCCCTTGGATGGTTCCTTGATCCTCTTATCTTTGGAAAATATCCTTTCTCAATGCAAAAACTTGTATCTGAAAGATTGCCAGAGATCACTGATGCAACCTCAAACTTGCTTGTGGGATCATTGGATTTTATTGGCATAAACCACTACACTTCATTGTATGCTCGAAACGACAGGACTCGGATTCATAAACTGATTATGCAAGATGCTATATCTGATGCTGCTGTTATTACAACAGCATACAGAAGAGGAGCTGCAATTGGAAATAAGGCTGCTTCAAGTTGGCTACACATTGTCCCATGGGGAATCAGAAAATTAATGAAACATGTCAAAAGTAAATATGGAAACACACCAGTGATCATAACTGAGAATGGAATGGATGATCCAAGTAGACCCTTAATGACCTTACAAAAGGCATTAAATGATGACAAAAGGATAAGATATCATAGGGACTATCTCTCAAATCTATCAGCTGCTATAAGGGAAGATGGTTGCGATGTGAGGGGTTACTTTGTGTGGTCATTACTTGATAATTGGGAGTGGAACATGGGATATACAGTACGCTTTGGGCTCTATTATGTGGATTTCAAAAACAATCTTACTAGGATACCAAAATCTTCTGTACAATGGTTCAAAAATATGCTCAGATTGGAAACTGGAAAAATATGCTCATACATAGAAAATAGCAAGTGTATATAG 1548 0.3766 MSISVTNTIILFFITQLLVRAESITRGDFPEGFIFGTASSAHQFEGAADEGNKGDSIWDTFSRIPGRILDFSNANMAVDQYHRFQNDINLMKDLGMDSYRFSISWPRIFPNGTGEPNTEGIKYYNTLIDALLEKGIQPFVTLYHWDLPQMLEDKYEGWLSTQIIKDFEHYAYTCFKAFGDRVKHWITFNEPHNFALHGYDLGIQAPGRCSLLGHLVCKKGKSSTEPYIVAHNILLSHAAAYRSYQLHFKEKQGGKIGIALDAVWYEPITELDEDKEAAARAMDFSLGWFLDPLIFGKYPFSMQKLVSERLPEITDATSNLLVGSLDFIGINHYTSLYARNDRTRIHKLIMQDAISDAAVITTAYRRGAAIGNKAASSWLHIVPWGIRKLMKHVKSKYGNTPVIITENGMDDPSRPLMTLQKALNDDKRIRYHRDYLSNLSAAIREDGCDVRGYFVWSLLDNWEWNMGYTVRFGLYYVDFKNNLTRIPKSSVQWFKNMLRLETGKICSYIENSKCI* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2608 515 Pfam Glycosyl hydrolase family 1 27 499 IPR001360 GO:0004553|GO:0005975
Mtr4g2608 515 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 33 47 IPR033132 -
Mtr4g2608 515 PANTHER GLYCOSYL HYDROLASE 14 499 IPR001360 GO:0004553|GO:0005975
Mtr4g2608 515 Gene3D Glycosidases 15 499 - -
Mtr4g2608 515 PRINTS Glycosyl hydrolase family 1 signature 324 338 IPR001360 GO:0004553|GO:0005975
Mtr4g2608 515 PRINTS Glycosyl hydrolase family 1 signature 402 410 IPR001360 GO:0004553|GO:0005975
Mtr4g2608 515 PRINTS Glycosyl hydrolase family 1 signature 425 436 IPR001360 GO:0004553|GO:0005975
Mtr4g2608 515 PRINTS Glycosyl hydrolase family 1 signature 447 464 IPR001360 GO:0004553|GO:0005975
Mtr4g2608 515 PRINTS Glycosyl hydrolase family 1 signature 471 483 IPR001360 GO:0004553|GO:0005975
Mtr4g2608 515 PANTHER BETA-GLUCOSIDASE 41-RELATED 14 499 - -
Mtr4g2608 515 SUPERFAMILY (Trans)glycosidases 16 498 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2608 Mtr-Chr4 39594327 39598618 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2608 19 444 Glycoside Hydrolase AT5G54570 72.600 0.0 670
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2608 K01188 - gmx:100783543 935.25