Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2584 ATGGCTCCTGTTGCTCCTCGAACTGGCGATGCAATATTTGCTAACATTGAACGCGTTAATGCGGAGCTCTTTACTCTCACATATGGTGCAATTGTTCGTCAATTGCTCACAGATCTCGAAGAGGTTGATGAAGTCAACAAGCAGCTAGATCAAATGGGTTATAATATTGGAATCCGTTTGATTGATGAGTTTTTGGCTAAATCTAATGTCTCAAGGTGTGTTGATTTCAGAGAGACTGCTGATGTCATTGCAAAGGTTGGTTTTAAAATGTTCCTCGGTGTTACCGCATCCGTGACCAATTGGGATGCTGAAGGGACTACTTGTAGTATTATTTTGGAGGATAATCCTTTGGTAGACTTTGTTGAGCTTCCTGACAACTATCAAGGTCTATACTACTGCAACATATTAAGTGGAGTCATTAGAGGAGCCTTAGATATGGTGTCAATGAAGGCTGAGGTCACTTGGCTACGAGATGCGCTTCGAGGTGATGATGTGTTTGAGTTGCAAGTAAAACTTCTCAAGCAAGTTCCAGAAGAGTATCCATATAAGGATGATGAGTAA 561 0.4135 MAPVAPRTGDAIFANIERVNAELFTLTYGAIVRQLLTDLEEVDEVNKQLDQMGYNIGIRLIDEFLAKSNVSRCVDFRETADVIAKVGFKMFLGVTASVTNWDAEGTTCSIILEDNPLVDFVELPDNYQGLYYCNILSGVIRGALDMVSMKAEVTWLRDALRGDDVFELQVKLLKQVPEEYPYKDDE* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2584 186 Pfam Transport protein particle (TRAPP) component 24 171 IPR007194 -
Mtr4g2584 186 PANTHER PROTEIN PARTICLE COMPLEX SUBUNIT, PUTATIVE-RELATED 1 186 - -
Mtr4g2584 186 CDD TRAPPC3_bet3 20 174 IPR016721 GO:0030008|GO:0048193
Mtr4g2584 186 PANTHER TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 3 1 186 IPR016721 GO:0030008|GO:0048193
Mtr4g2584 186 Coils Coil 32 52 - -
Mtr4g2584 186 SUPERFAMILY Ligand-binding domain in the NO signalling and Golgi transport 18 176 IPR024096 -
Mtr4g2584 186 PIRSF TRAPP_1_Bet3 3 185 IPR016721 GO:0030008|GO:0048193
Mtr4g2584 186 Gene3D Trafficking protein particle complex subunit 3 3 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2584 Mtr-Chr4 39382954 39385723 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2584 K20302 - sind:105174821 352.058