Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2359 ATGGCTACCATCAATGGAAATACTGATGCTGCTCAACCCATTGTTGCTCCAACAAAACAACCTCTTCCTCCTCCTAAGTCCGTTGATTCCACCTCTGTTCTCAAAAGGTTGCAGTCTGAATTGATGTCATTGATGATGAGTGGTGAATCTGGTATATCTGCTTTTCCTGAGGAGGACAACATATTCTTGTGGAAAGGAACAATAACAGGAAGCAAAGATACAGTGTTTGAAGGCACAGATTACAAGTTATCACTGTCTTTTCCTAATGATTACCCTTTTAAGGCTCCCAAAGTCAAGTTTGAAACTACCTGCTTCCATCCCAATGTTGATCTTCATGGCAACATATGCTTGGACATACTTCAGGATAAATGGTCATCTGCTTATGATGTCAGAACAATTCTACTATCCATCCAAAGTCTTCTTGGAGAGCCAAACATTAGTTCACCACTAAATCCACAAGCAGCACAGCTTTGGAGCAATCAAGAAGATTACAGGAAGATGGTGGAGAAGTTGTACAAATCTCCAAGTGCTACTGCTTAG 540 0.4093 MATINGNTDAAQPIVAPTKQPLPPPKSVDSTSVLKRLQSELMSLMMSGESGISAFPEEDNIFLWKGTITGSKDTVFEGTDYKLSLSFPNDYPFKAPKVKFETTCFHPNVDLHGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNPQAAQLWSNQEDYRKMVEKLYKSPSATA* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2359 179 MobiDBLite consensus disorder prediction 1 30 - -
Mtr4g2359 179 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 105 120 IPR023313 -
Mtr4g2359 179 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 17 175 - -
Mtr4g2359 179 SUPERFAMILY UBC-like 30 172 IPR016135 -
Mtr4g2359 179 Pfam Ubiquitin-conjugating enzyme 36 170 IPR000608 -
Mtr4g2359 179 PANTHER BNAC06G03670D PROTEIN 17 175 - -
Mtr4g2359 179 SMART ubc_7 35 177 - -
Mtr4g2359 179 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 32 177 IPR000608 -
Mtr4g2359 179 CDD UBCc 35 172 IPR000608 -
Mtr4g2359 179 Gene3D Ubiquitin Conjugating Enzyme 26 177 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2359 Mtr-Chr4 37152261 37154464 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2359 34 141 Miscellaneous Gene Families AT3G17000 32.743 1.54e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2359 K06688 - gmx:100305664 299.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2359 4 37152261 37154464 Mtr4g2359 4 37152261 37154464 ECH