Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2342 ATGGAGAGTGGTTCAGTTAAGAGAAAAAGTGGTGGTGGTGGTGGAAACGCAGTAGAGGTTCTAGATGGTTCTAATATTATGGAGTTAGTTGGAAACAAAGATGTTTTTAGTAACTTTGTGAACCATAAGTTTCAAGAGTTGGATAGAGATAAAGATGGTAAACTCTCTCTGACTGAACTTCAACCTGCTGTTTCTGATATTGGTTCTGCTCTTGGTTTACCTGCTAAAGGCACTAATCCTGATTCTGATCACATCTATTCTGAGGTATTGAATGAATTCACACATGGAAAGCAAGAAAAAGTGAGCAAGACTGAGTTCAAAGAGGTTCTCTCAGACATTCTGTTGGGCATGGCTGCTGGACTCAAACGTGATCCAATTGTGATACTTCGCATTGATGGCGAAGATCTTCTCGAGTTTCTTAATGGTCCAAGTTATGAACCAGAGATAGTTTCCATATTCTCTCAAATTGAATCACCTCAAAAATCTCTTCATGATCTTATAATTCAAGCTCTCAGCAAACTCAATGTTGATCAAGGGATTCCTCCTACTTCTGATTCTTGGGTTATTAGCAACATTGTGGAACCGGCACTGCTTTCTGAACATGGGCATGATTTAGATAAACCTGTTTCTCAAGAGATATTTTTGGAGGAATTTAAGAAAGTAGCATTGAGCGTGGCGAATCGCCTTAAGGAGCAACCTGTTATAGTTGCTCATAGTGAAAGCACCTTTGATGGAAATGGTGTTAAAAGACTATTATCCAACAAGTTTGAATTAGACAAGATTTTGAACTCAGCTATAGAGACTTTGCCTAAAGATAAAAATGGAAAAATTTCGAAGGATTACCTACGCGTGGCGCTGGACACGGTGGCTCCATCTGCTGCTTTACCTCCATTTGGTGCAATTGAAGAGATGGATAAGGTAATTGGTGAAGTGTTCAAGTTGGTGAGTGCAGATGATGCAAAGTTGGTGAAAGAAGAAGAATTCAAGAAAATATTAACTGAAATATTGGGGAGTATCATGTTGCAGTTGGAAGGAAATCCTATAGCAGTTGCTTCAAATTCTGTAGTGCATGAGCCTCTAGGCTCCTCTTCTACACTTCTGCAGCCAACCCCTGCTGAAACAGCATAA 1128 0.3972 MESGSVKRKSGGGGGNAVEVLDGSNIMELVGNKDVFSNFVNHKFQELDRDKDGKLSLTELQPAVSDIGSALGLPAKGTNPDSDHIYSEVLNEFTHGKQEKVSKTEFKEVLSDILLGMAAGLKRDPIVILRIDGEDLLEFLNGPSYEPEIVSIFSQIESPQKSLHDLIIQALSKLNVDQGIPPTSDSWVISNIVEPALLSEHGHDLDKPVSQEIFLEEFKKVALSVANRLKEQPVIVAHSESTFDGNGVKRLLSNKFELDKILNSAIETLPKDKNGKISKDYLRVALDTVAPSAALPPFGAIEEMDKVIGEVFKLVSADDAKLVKEEEFKKILTEILGSIMLQLEGNPIAVASNSVVHEPLGSSSTLLQPTPAETA* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2342 375 ProSitePatterns EF-hand calcium-binding domain. 48 60 IPR018247 -
Mtr4g2342 375 ProSiteProfiles EF-hand calcium-binding domain profile. 35 70 IPR002048 GO:0005509
Mtr4g2342 375 SUPERFAMILY EF-hand 42 346 IPR011992 -
Mtr4g2342 375 SMART efh_1 261 289 IPR002048 GO:0005509
Mtr4g2342 375 SMART efh_1 39 67 IPR002048 GO:0005509
Mtr4g2342 375 SMART efh_1 307 335 IPR002048 GO:0005509
Mtr4g2342 375 Pfam EF-hand domain pair 42 109 IPR002048 GO:0005509
Mtr4g2342 375 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 2 374 - -
Mtr4g2342 375 Gene3D - 40 338 - -
Mtr4g2342 375 ProSiteProfiles EF-hand calcium-binding domain profile. 257 292 IPR002048 GO:0005509
Mtr4g2342 375 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 2 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2342 Mtr-Chr4 36872210 36876168 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2342 19 374 EF-hand Containing Proteins AT4G38810 67.967 1.03e-174 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2342 - - gmx:100820516 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2342 4 36872210 36876168 Mtr4g2342 4 36872210 36876168 ECH