Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2323 ATGGTTCCACCACCACCAAACCCAGAAACCCAACAATTCCTCAGCTCAATCCTCTCCCAACGCGGCCCCTCCGCGCTCCCTTACTCCGAAGACACCAAATGGCTTATCCGTCAACACCTCCTCTCTCTCCTCACCACCTTCCCTTCTCTCGAACCCAAAACCGCCACCTACACTCATAACGACGGCCGCGCCGTCAATCTCCTCCAAGCCGACGGTACGATCCCCATGACCTACCAATCCGTCACCTACAACATCCCAATTGTTATCTGGCTTATGGAATCTTACCCTCGTCACCCTCCTCGTGTTTATGTTAATCCCACCAGGGATATGATTATTAAACATGCTCATCCTCATGTTAATCCTTCTGGATTGGTTTCCGTTCCGTATCTGCATAATTGGATTTACCCTAGTTCTAATTTGGTTGATCTTGTTCTTGCTTTGAGTTTGATTTTTGGTCGTGATCCTCCTCTTTATTCTCAACGTAGACCTAATCCTAATCCTAACCCTCATCAAAATCATAATCATAATCCTAATCCTAATCCAAATACCAATCAAAGTTCTAATTTTGGAACTAATCCTCCATCTGGGTATTCTCATCCTGGTAGGATTAATAGTAATATTAATATTAATAGTTATCCTCCTTCACCTTATTCACCTGCGCCTTCTCGGCCTACGCATACGGAGGATCCTACCGAGGTTTTTAGGAGGAATGCTATTAACAAGCTGGTGGAGATGGTGCATAATGATGTAACGGCGTTGAGGAAGACTAGAGAAGGTGAAATGGAAGGGTTGTTTGGTTTGCAAGGGGTTTTGAAGCAGAGGGAGGAGGTTTTGAATAATGGTGTGAAGGAGATGCAAGATGAGATGGAGGGTTTGGAGCAACAGTTGCAGATGGTTTTGATGAATACGGATGTTTTGGAGGGTTGGTTGAGGGAGAATCAAGGGAAGAAATTGGGGAGTGTGGAGAATGCTGAGGAGGCTTTCGAGTGTGTGGATGTGCTTTCGAAACAGATGCTTGATTGTACTTCTGCTGATTTGGCTATTGAAGATACGCTTTATGCCTTGGATAAGGGTGTTCAGGTTGGCTCTGTGCCGTTTGATCAGTATTTGAGGAGTGTGAGGGCGTTGTCCAGGGAGCAGTTCTTTCACCGTGCTACGGCTGCTAAAGTTAGAGCTGCTCAGTTGCAGGCTCAGGTTGCGAATATGGCTGCTAGGAATCACCATTATGGTAGCTGA 1236 0.4587 MVPPPPNPETQQFLSSILSQRGPSALPYSEDTKWLIRQHLLSLLTTFPSLEPKTATYTHNDGRAVNLLQADGTIPMTYQSVTYNIPIVIWLMESYPRHPPRVYVNPTRDMIIKHAHPHVNPSGLVSVPYLHNWIYPSSNLVDLVLALSLIFGRDPPLYSQRRPNPNPNPHQNHNHNPNPNPNTNQSSNFGTNPPSGYSHPGRINSNININSYPPSPYSPAPSRPTHTEDPTEVFRRNAINKLVEMVHNDVTALRKTREGEMEGLFGLQGVLKQREEVLNNGVKEMQDEMEGLEQQLQMVLMNTDVLEGWLRENQGKKLGSVENAEEAFECVDVLSKQMLDCTSADLAIEDTLYALDKGVQVGSVPFDQYLRSVRALSREQFFHRATAAKVRAAQLQAQVANMAARNHHYGS* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2323 411 ProSiteProfiles Steadiness box (SB) domain profile. 332 400 IPR017916 -
Mtr4g2323 411 Pfam Vps23 core domain 326 389 IPR017916 -
Mtr4g2323 411 PANTHER TUMOR SUSCEPTIBILITY GENE 101 PROTEIN-RELATED 6 409 - -
Mtr4g2323 411 PANTHER PROTEIN ELC-LIKE 6 409 - -
Mtr4g2323 411 MobiDBLite consensus disorder prediction 164 213 - -
Mtr4g2323 411 Gene3D - 333 393 - -
Mtr4g2323 411 SUPERFAMILY Endosomal sorting complex assembly domain 332 392 IPR037202 -
Mtr4g2323 411 Coils Coil 275 302 - -
Mtr4g2323 411 Pfam UEV domain 37 157 IPR008883 GO:0015031|GO:0036211
Mtr4g2323 411 ProSiteProfiles UEV domain profile. 17 161 IPR008883 GO:0015031|GO:0036211
Mtr4g2323 411 Gene3D Ubiquitin Conjugating Enzyme 7 158 IPR016135 -
Mtr4g2323 411 MobiDBLite consensus disorder prediction 158 229 - -
Mtr4g2323 411 SUPERFAMILY UBC-like 19 157 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2323 Mtr-Chr4 36715626 36717314 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2323 K12183 - gmx:100798165 604.749