Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2300 ATGAAGCGTCTCCCCAAAAGTGATGCTCCTGCCGGAACATCTGATGTTTTTCCACTCAGTAGAATGGAAGAGATTAACCAGAAGGAGGAGGAATATCATCCAAGGGTGACAGAAGACAGCAACAATGCCAATGACGACACGAGGTATGGTGTGGAAGAGAACGGAGAAGAAGAAGAAGAAGCCTCAGAGAATGAAGATGATCAATTCATCTTTGGCGATGGTGTAAATCCTTTGGACTTCGTTCGTAATAATGATTCCGATGTTAGATTGTACCAGAAATTTAAAGATTACCATCAGAAATCTATAGAGTATCGTGCTCTCGATAACAGAAAACGAAAACTACCCCTACAATCTCACCGTGAAGAGACTTCTTCTAAGAAGGCAGGGGAAGATGATATTTTTGGGGTAAACCCAGCTGAGGTTGAGGAATTTATAAATTTTGGAGAGGGCAAGAGACCAAGAAAGAAGAGGTCAAAAAAAAGAGGTAGGCAAAAAGGATCAAAGAAGAAACTTGACGAAAAGATATCGCAGATGTTGGGTGATGCCCACGTTCACTATGCAAATGGCCGTCATAAAATGGCTATATCTGTATTGCATGAAGTTGTCAGGCTGGAGCCAAATTTACCTGACTCGTATCACACCCTTGGACTTGTCCATGGTGCAATTGGGGATCACGAAAATGAAATGGGTTTTTACATGATTACTGCTCATTTGACTCCAAAAGATCCAACTCTTTGGAAGACGCTTTATGTGTGGTCCATAGGACAAGATGATATTGGTCAAGCCAGTTATTGTATTTCGAAAGCAATAAAAGCAGATCCCCAAGATAGTAGTCTTAGGAGTCATCAAGCAATGCTTTATGCTGAAAGTCAAAATTATCAAAAAGCTGCTGAGGCATATGAACAAGTATATCAACTTTGTCGTGAAAATGTTGATGCACTAAAAGCAGCAGCTAAGTACTACCAAAAGTGTGGTCAAGTTGAACGCTCAATTTGCATTCTCGAAGACTATCTGAAGAATAAACCAGATGGAGTAAATGCAAGTGTAGTTGATCTACTTGGTGCCATATTGATGGAAATAAAGGCGCATGACAGAGCACTTCAGTACATAGAACAATCTCAAGTGGTTGGAAAAGAATTGCCCTTAAATTTGAAAGTTAAAGCTGGAATCTGCCATGTTCATCTTGGAAACTTGGAAATGGCTCAGGTTTTTTTCAATGATTTGAAACCAGAGAATGCAAGCAAGCATGTTGAGTCGATCACCGAGGTCGCAGACTCATTTATGGGTCTTGGACATTATAATTCTGCATTGAATTATTTTAAGATGTTGGAAGGAAATAGTAAAAATGAAGATGGTCTTCTGTATCTGAAAATTGCTAGATGTTATCAAGCGTTGGGAGAAAGGAAACAAGCAATTATCTCTTTTTACATAGTCCTAGAAACACTACAAGATGATGTTGAAGCGCGCATAACTTTGGCTTCCCTTCTAGTTGAGGAGGGGAAAGAAAATGAAGCCATTTCCTTGCTGTCTCCTCCAAAGGATTCCGGTACTGACTCTGGTGAAGCACATTCTGAAAAGCCAAATAGATGGTGGATTGATGTGAGAATAAAACTTAAGCTCTGTAACATATTTCAGATTAGAGGGATGCTTACTGATTTTGTGGATGTATGTTTCCCTTTAGTACGTGAATCTTTGAATGTTGCAACTCCTAAACGAAAGGGAAAACTGTTGCTACCTGGCAAATCAAAGAAGAAGCGTCTCTCCACAAGTGATCTTCTTAAAAGGGTAGAAAAACTTGCTGCTCCGGAAACAGATAGTGTATTTCGAGGATTCAAGGCAGTAGCCACATCATCTGATCGGTTGAAGGCTTCCAGAGCAAAAAAGGCTCTTGAGGAAAAGGCAATTGAGAAGGAGAAAAGGAAAGCTGAGGCAGCGGCCTCTGGAATTGACTGGCGAAGTGATGACTCGGATGATGAGCTTCAGAAACCAAACACAGAATCTCCCTTGTGTAATCTTCACAAAGATGAAGGATATCACCAGCTACTCATTGATTTGTGCAATGCATTAGCATCCTTGCAAATGTATAGGGAAGCATTAGAGATTATCAATCTCTCTCTGAAATTGGCTCATATTTCTCTGTCTGCTGAGAAGAATGAGAAGCTTCGATCTCTTGGAGTTCAAATGGCATACAGCACCCCAGATCCTAAACAAGGTTTTGATTGTGTAAAAGGCATTGTTAAACAACATGCACAGAGTGTTGCAGCTTGGAATTGCTACTACAAGGTCATCTCGAGATTGGAAAACCGAGATACAAGACATGACAAATTTTTACGTGATATGCAAGAAAAATATGTGGATTCTGTGCCTCCTATCCTCATTTCTGCGCATCAGTTTACTTTATGTAGCCATCATCAAGACGCGGCAAGGAAATACCTTGAAGCTTATAAACTTTTGCCCAAGAATCCATTGGTTAATCTTTGTGTTGGAACGGCCTTGATCAACTTGGCGCTGGGTTTCAGACTTCAAAATAAGCATCAGTGTGTTGTACAAGGTTTAGCATTCCTCTACAATAATTTGGAGATCTGTAAGAACAGCCAGGAATCTACTGAACTAATTGATTGCCCAGCCTTGCAGGAATCTTTATATAACATAGCTCGCGCATACCATCATGTTGGTCTTGTAACACTGGCAGCAATATATTATGAGAAGGTGATTGCTATTAAGGAGAGAGACTATCCAATTCCAAAATTTGAAAATGAGAATATTGACGTCAATGAAAATCACAAACCTGGTTACTGTGACCTTCGCAGAGAGGCAGCTTACAATCTACATTTAATTTACAAAAAGAGTGGTGCTCTCGATCTTGCTAGACAAGTTTTGAAAGATTATTGTTCCGTTTGA 2901 0.4002 MKRLPKSDAPAGTSDVFPLSRMEEINQKEEEYHPRVTEDSNNANDDTRYGVEENGEEEEEASENEDDQFIFGDGVNPLDFVRNNDSDVRLYQKFKDYHQKSIEYRALDNRKRKLPLQSHREETSSKKAGEDDIFGVNPAEVEEFINFGEGKRPRKKRSKKRGRQKGSKKKLDEKISQMLGDAHVHYANGRHKMAISVLHEVVRLEPNLPDSYHTLGLVHGAIGDHENEMGFYMITAHLTPKDPTLWKTLYVWSIGQDDIGQASYCISKAIKADPQDSSLRSHQAMLYAESQNYQKAAEAYEQVYQLCRENVDALKAAAKYYQKCGQVERSICILEDYLKNKPDGVNASVVDLLGAILMEIKAHDRALQYIEQSQVVGKELPLNLKVKAGICHVHLGNLEMAQVFFNDLKPENASKHVESITEVADSFMGLGHYNSALNYFKMLEGNSKNEDGLLYLKIARCYQALGERKQAIISFYIVLETLQDDVEARITLASLLVEEGKENEAISLLSPPKDSGTDSGEAHSEKPNRWWIDVRIKLKLCNIFQIRGMLTDFVDVCFPLVRESLNVATPKRKGKLLLPGKSKKKRLSTSDLLKRVEKLAAPETDSVFRGFKAVATSSDRLKASRAKKALEEKAIEKEKRKAEAAASGIDWRSDDSDDELQKPNTESPLCNLHKDEGYHQLLIDLCNALASLQMYREALEIINLSLKLAHISLSAEKNEKLRSLGVQMAYSTPDPKQGFDCVKGIVKQHAQSVAAWNCYYKVISRLENRDTRHDKFLRDMQEKYVDSVPPILISAHQFTLCSHHQDAARKYLEAYKLLPKNPLVNLCVGTALINLALGFRLQNKHQCVVQGLAFLYNNLEICKNSQESTELIDCPALQESLYNIARAYHHVGLVTLAAIYYEKVIAIKERDYPIPKFENENIDVNENHKPGYCDLRREAAYNLHLIYKKSGALDLARQVLKDYCSV* 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2300 966 MobiDBLite consensus disorder prediction 27 50 - -
Mtr4g2300 966 MobiDBLite consensus disorder prediction 1 20 - -
Mtr4g2300 966 Gene3D Tetratricopeptide repeat domain 382 525 IPR011990 GO:0005515
Mtr4g2300 966 Gene3D Tetratricopeptide repeat domain 166 379 IPR011990 GO:0005515
Mtr4g2300 966 Gene3D Tetratricopeptide repeat domain 615 965 IPR011990 GO:0005515
Mtr4g2300 966 MobiDBLite consensus disorder prediction 51 67 - -
Mtr4g2300 966 MobiDBLite consensus disorder prediction 646 668 - -
Mtr4g2300 966 SUPERFAMILY TPR-like 185 507 IPR011990 GO:0005515
Mtr4g2300 966 Coils Coil 620 647 - -
Mtr4g2300 966 Pfam Tetratricopeptide repeat 879 909 IPR019734 GO:0005515
Mtr4g2300 966 ProSiteProfiles TPR repeat profile. 277 310 IPR019734 GO:0005515
Mtr4g2300 966 MobiDBLite consensus disorder prediction 27 73 - -
Mtr4g2300 966 Coils Coil 297 317 - -
Mtr4g2300 966 MobiDBLite consensus disorder prediction 152 167 - -
Mtr4g2300 966 MobiDBLite consensus disorder prediction 148 173 - -
Mtr4g2300 966 PANTHER TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 3-RELATED 22 966 IPR039340 GO:0006383
Mtr4g2300 966 SMART tpr_5 452 485 IPR019734 GO:0005515
Mtr4g2300 966 SMART tpr_5 347 380 IPR019734 GO:0005515
Mtr4g2300 966 SMART tpr_5 277 310 IPR019734 GO:0005515
Mtr4g2300 966 SMART tpr_5 878 911 IPR019734 GO:0005515
Mtr4g2300 966 SMART tpr_5 679 712 IPR019734 GO:0005515
Mtr4g2300 966 SMART tpr_5 175 208 IPR019734 GO:0005515
Mtr4g2300 966 SMART tpr_5 209 242 IPR019734 GO:0005515
Mtr4g2300 966 SUPERFAMILY TPR-like 416 834 IPR011990 GO:0005515
Mtr4g2300 966 MobiDBLite consensus disorder prediction 646 662 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2300 Mtr-Chr4 36444683 36482444 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2300 K15201 - gmx:100813793 1170.22