Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2299 ATGCCAGAAACCGAGTCAATTGATATTGAGTGGCCGGCAAAGCGCGTCAGAGACACATTCGCGAAGTTCTTCGAAGAGAAGAATCACGTCCATTGGAAGTCCAGCGCTGTCGTTCCTCTCAATGACCCTACTCTCCTCTTTGCTAACGCCGGGATGAACCAGTTCAAGCCAATTTTTTTGGGGACTGTTGATCCTAATACCGCGCTGAGTAAACTCACTCGTGCCTGCAATATCCAGAAGTGTATCCGAGCAGGTGGTAAGCACAATGATCTTGATGACGTGGGGAAAGACACTTACCATCACACTTTCTTTGAGATGCTTGGTAACTGGTCCTTTGGCGATTACTTCAAAGAAGAAGCCATTAGCTGGGCATGGGAGCTTCTTACAGAAGTATATAACTTACCATCAGATCGTATTTATGTTACATATTTTGGTGGTGATGAGAAAACTGGTCTTGGCCCTGACAATGAAGCTAGAGATATATGGTTAAAGTTTTTGCCTCCTGGACGCGTTCTTCCTTTTGGAAGTAAAGACAATTTCTGGGAAATGGGTGACACTGGTCCTTGTGGACCTTGCTCTGAAATACATTTTGACAGAATTGGTAACCGCAACGCTTCATCTTTCGTAAATGATGAGGATCCTAACTGCATTGAGTTATGGAACCTTGTCTTCATACAGTTCAATAGGGAGGCTGACGGCTCTCTTAAATCCCTGCCTGCAAAGCATGTTGACACTGGCATGGGTTTTGAACGACTGACCTCTATACTGCAGCATAAAAATAGCAATTATGATACTGATGTCTTTGTGCCTATCTTCGATGCTATTCAGCAGGCAACTGGTGCTCGACCATACTCCGGGAAAGTTGGACCACATGATGCAGATAAAGTTGACATGGCATACAGGGTTGTTGCAGATCACATCAGGACTCTGTCAATTGCCATTGCTGATGGATCTCAACCTGGTAATGTTGGTCGCGAGTATGTTCTGAGGCGTATACTTCGTCGAGCAGTTCGGTATGGAAGGGAAGTGCTAAAAGCTGAAGAGGGTTTTTTCAATGGGCTTGTAAATGTTGTGGCAAACGTGCTGGGTGATGTTTTCCCCGAGCTAAAGCAAAATGAAGAGCGCATTAGGAAGATGATTCAAGTGGAGGAGGAAAGTTTCAGCAGAAACTTATTTAAGGGCATCAGAAAATTTAACAAAGCCGTTGAACATGTTCAGGGAAATATACTGAGCGGGGAGGTAGCGTTTGAGTTGTCCCATACATTTGGGTTCCCATTAGATCTCACACAGCTTATGGCTGAAGAAAAGAAATTTTCTGTTGACATCGAAGGTTTTCATCGTGCTATGAAAGCCGCGAGGGAAAGATCAAAAACTGCTCCAAAGAAGAAAGTTTTGTCTCTGAAAAGCAACGTGGAAACGTTATCGATTCCTGCAGCCAAGAAAGCTGAAAACAAGATCGAGATAGTCCTACCTCAGGATCAAATGAGAAAAGCACAAAAACATGTTGCCGAAGAAGACAAACGGAAAGCTGTAAAGATAACTACGGAGAAGGCAGACCTAGCTGTTTCCGACGGGAAATATTTTTGCATATCTCACGTTGATGTTGGCCTGGATGTTGCAGCCGTTCGTGAGGCTGTAAAAAAAGTCATTGATCAGAAGGGACTGTCGGTGATGGTTTTTAGCACTGATGAATCTACAAACAAAGCTGTAGTGTGTGCTGGGGTGCCGGAGAAAGGAGACAAAGGTAAGCTGGATGCATCAGAATGGCTGAGTAATGCTTTGGGGCCACTGAAAGGGAGATGTGGTAAAGGAAAAGGAGGTCTTGCAACGGGTCAGGGTACAGATGCATCACACCTAAATGAGGCTATGGGTCTTGCCGTGAAATTTGCATCTGTGAAATTGACTTAA 1908 0.4444 MPETESIDIEWPAKRVRDTFAKFFEEKNHVHWKSSAVVPLNDPTLLFANAGMNQFKPIFLGTVDPNTALSKLTRACNIQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAISWAWELLTEVYNLPSDRIYVTYFGGDEKTGLGPDNEARDIWLKFLPPGRVLPFGSKDNFWEMGDTGPCGPCSEIHFDRIGNRNASSFVNDEDPNCIELWNLVFIQFNREADGSLKSLPAKHVDTGMGFERLTSILQHKNSNYDTDVFVPIFDAIQQATGARPYSGKVGPHDADKVDMAYRVVADHIRTLSIAIADGSQPGNVGREYVLRRILRRAVRYGREVLKAEEGFFNGLVNVVANVLGDVFPELKQNEERIRKMIQVEEESFSRNLFKGIRKFNKAVEHVQGNILSGEVAFELSHTFGFPLDLTQLMAEEKKFSVDIEGFHRAMKAARERSKTAPKKKVLSLKSNVETLSIPAAKKAENKIEIVLPQDQMRKAQKHVAEEDKRKAVKITTEKADLAVSDGKYFCISHVDVGLDVAAVREAVKKVIDQKGLSVMVFSTDESTNKAVVCAGVPEKGDKGKLDASEWLSNALGPLKGRCGKGKGGLATGQGTDASHLNEAMGLAVKFASVKLT* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2299 635 PANTHER BNACNNG61840D PROTEIN 5 463 - -
Mtr4g2299 635 PANTHER BNACNNG61840D PROTEIN 460 634 - -
Mtr4g2299 635 Pfam tRNA synthetases class II (A) 16 480 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Mtr4g2299 635 SUPERFAMILY Class II aaRS and biotin synthetases 13 263 IPR045864 -
Mtr4g2299 635 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 264 464 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Mtr4g2299 635 Gene3D Bira Bifunctional Protein; Domain 2 12 260 IPR045864 -
Mtr4g2299 635 PANTHER ALANYL-TRNA SYNTHETASE 460 634 - -
Mtr4g2299 635 PANTHER ALANYL-TRNA SYNTHETASE 5 463 - -
Mtr4g2299 635 TIGRFAM alaS: alanine--tRNA ligase 16 474 IPR002318 GO:0000166|GO:0005737
Mtr4g2299 635 Hamap Alanine--tRNA ligase [alaS]. 1 635 IPR023033 GO:0004813
Mtr4g2299 635 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 11 525 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Mtr4g2299 635 PRINTS Alanyl-tRNA synthetase signature 89 100 IPR002318 GO:0000166|GO:0005737
Mtr4g2299 635 PRINTS Alanyl-tRNA synthetase signature 217 228 IPR002318 GO:0000166|GO:0005737
Mtr4g2299 635 PRINTS Alanyl-tRNA synthetase signature 244 257 IPR002318 GO:0000166|GO:0005737
Mtr4g2299 635 PRINTS Alanyl-tRNA synthetase signature 301 317 IPR002318 GO:0000166|GO:0005737
Mtr4g2299 635 PRINTS Alanyl-tRNA synthetase signature 325 338 IPR002318 GO:0000166|GO:0005737
Mtr4g2299 635 CDD AlaRS_core 13 259 - -
Mtr4g2299 635 Pfam DHHA1 domain 495 626 IPR003156 GO:0003676
Mtr4g2299 635 Gene3D - 522 630 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2299 Mtr-Chr4 36430599 36438271 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2299 K01872 - gmx:100788271 789.26