Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mtr4g2288 | ATGTCTCAACCACCACTCTCTGCTGCCGAAACAACGCCTACTTCTATGCCTAATTCTTCTTCTTCTTCTTCTTCAACTCCTGCATCATCACCGGCGCCACCAGTCTCTTACGCCCCTCATCAAAATGTTAACTCTTCTGCGAATTCTCAGCAGCAACAGCAGGCGTCACATTCTGGGATGAACCCTAATTCTGTCGTCAACCCTCCATTTCATACTCACACCCCACGTCCCGCTGCCCCTTCATTTTCATATAATTTTCCCCAAAGTGCGCCGCCAGCTTTTACTGGCAACCAACATGGGCAATCTAACACTAACATGCCTGATTCCGTCACACAAGATTTTAGTAAAGTGCCATCTGCATCAATTAACTTACATTCGGCTCCTGCTCCTACCTCTATATCCGCAATGGCGCCTCGCTCTGACCCTAACTATCGCCCAACTACTTTATGGATGCCAACTGCCCCAACTTTTCCCATCCATCCTGTAATGCCTGGAACTCCTGGTACTCCTGGTCCCCCTGGATTAACAAAACCTGTGATGATACCCTCCAATCCAGCTGCTCCATCTACAACAGGTTTTCCCTCAGCTGCAGTACCGAGACAAAATATGCCAACCGCATCAGATCCTAATGCCTCACATAGAGGAGGCTTACCCTATCCACCCATACCTTCCATGGTTGCTCCACCTCAGGGATATTGGTTACAGCCTCCACAGATGAGTGGTGTACTTAGGCCACCATTTCATCAATATCCTGCTGCTTTTCCTGGCCCCTTTCCATTTCCAGCACGTGGTGGTGCACTCCCTGCTGTTCCAGTACCTGATTCTCAACCTCCTGGTGTTACTCCTGTTGGTGCTGCCAGCATTTCTGCACCCTCTTCTTCCAATCATCTGCTGAGGGGAACATCTGGTGTGCAGACAGAAGTAATTTCAGCACATACTGATGACAAGCACAAATTAAATGCCACTGTGACACAGAATGAGGATGCCGCTAATGATCAGCTAGATGCTTGGACTGCCCACAAGACTGAAGCAGGGATTGTATACTATTATAATGCTTTGACAGGGCAATCAACATATGATAAACCTGCTGGCTTTAAAGGGGAGGCTCACCAAGTTTCTGTGCAGCCCACTCCAGTTTCAATGGTAGATTTGCCTGGTACTGATTGGCAGTTGGTCTCTACTAGTGATGGGAAAAAATATTACTATAACAATCGAACCAAGACAAGCTGCTGGCAAATTCCCAATGAGGTGGCGGAATTGAAAAAAAAGCAGGACAGTGATGTTACAAAAGATCATCCAACGCCTGTTCCAAATACTAATGTATTGTCTGAGAGAGGGTCTGGAATGGTTGCTCTGAATGCTCCTGCTATTACCACTGGTGGTCGTGATGCTGTAGCTTCTAAGCCCTTTATCGTACAGAGCTCACCATCGGCACTGGATTTGATCAAGAAGAAGTTGCAGGAATCAGGAGCACCTGTTACATCCTCTTCTATTCCTACTCCATCAGTGCAACCAGGATCCGAATCAAATGGTTCAAAAGCAACCGACTCTACAGCCAAGAGCCTGCAAAATGATAATAGCAAAGACAAACAAAAAGATGCTAATGGTGATGCTAATGTCTCTGATACATCTTCAGATTCAGAAGACGAGGATAGTGGGCCTTCAAAGGAGGAGTGCATAAATCAATTTAAGGAGATGCTTAAGGAGCGTGGCGTGGCACCATTCTCAAAGTGGGAGAAAGAACTACCAAAAATAGTATTTGATCCTCGTTTTAAGGCTATCCCTAGCTATTCTGCTAGGAGATCCTTGTTTGAACATTATGTTAAAAATCGCGCGGAAGAAGAACGCAAGGAAAAACGTGCTGCACAAAAGGCTGCAATTGAGGGGTTTAAGCAGCTACTAGACGAAGCCTCAGAGGATATTGATGACAAGACCGACTCTCACACTTTTCGAAAGAAATGGGGAAATGATCCACGGTTTGAGGCATTGGACCGCAAGGAACGGGAGCATCTTCTGAACGAAAGAGTGCTTCCTTTAAAGAAAGCCACTGAAGAAAAAGCTCAAGCAATGCGTGATGCTGCTGCTGACAGTTTTAAGTCAATGCTTAAAGAACAAGGAGAAATAACTTTCAACTCTCGCTGGTCCAGGGTTAAAGAGAGTTTAAGAGATGACCCGAGATATAAATCTGTGAAACATGAGGATAGGGAATTATTGTTCAATGAGTATATTTCCGAGTTGAAAGCTGTTGAACATGCAGCAGAACGAGAGACCAGAGCTAAAAGGGAGGAGCAGGACAAGCTGCGGGAGAGGGAGCGGGAGCTGCGTAAACGGAAGGAAAGAGAAGAACATGAAATGGAAAGGGTACGCCTAAAAATTCGTAGGAAGGAGGCAGTTACTTCTTTTCAAGCTTTACTTGTTGAGAGAATCAAAGACCCTATGGCATCATGGACAGAATCGAAGCCTAAACTAGAAAAAGATCCTCAAGGGCGTGCAACCAATTCTGATCTTGATTCAGCTGACATGGAAAAACTCTTCCGGGATCATGTAAAGATGCTTCAGGAACGTCGTGCTCGCGATTTTAGAGCTCTTCTAGCTGAATTCTTGACTTCTGAAGCCGCGTCTCAGGAAACTGACGATGGGAAAACAGTGCTTAATTCATGGTCTACAGCAAAGCGTCTTATAAAATCTGATCCAAGATATAACAAGGTTCCAAGTGAAGATAGAGAAGCCTTGTGGCGCCGGTATGCAGAGGATATGATTCGGCGGCAAAAATCATCTCATGATTCAAAGGAAGAAAAACATACAGATGCCAGAGGTAGAAAGTCTCTAGAGTCTTCCAAAAATCCATTGGAATCAGGGAGATCGCATGAGAGAAGATAA | 2880 | 0.4535 | MSQPPLSAAETTPTSMPNSSSSSSSTPASSPAPPVSYAPHQNVNSSANSQQQQQASHSGMNPNSVVNPPFHTHTPRPAAPSFSYNFPQSAPPAFTGNQHGQSNTNMPDSVTQDFSKVPSASINLHSAPAPTSISAMAPRSDPNYRPTTLWMPTAPTFPIHPVMPGTPGTPGPPGLTKPVMIPSNPAAPSTTGFPSAAVPRQNMPTASDPNASHRGGLPYPPIPSMVAPPQGYWLQPPQMSGVLRPPFHQYPAAFPGPFPFPARGGALPAVPVPDSQPPGVTPVGAASISAPSSSNHLLRGTSGVQTEVISAHTDDKHKLNATVTQNEDAANDQLDAWTAHKTEAGIVYYYNALTGQSTYDKPAGFKGEAHQVSVQPTPVSMVDLPGTDWQLVSTSDGKKYYYNNRTKTSCWQIPNEVAELKKKQDSDVTKDHPTPVPNTNVLSERGSGMVALNAPAITTGGRDAVASKPFIVQSSPSALDLIKKKLQESGAPVTSSSIPTPSVQPGSESNGSKATDSTAKSLQNDNSKDKQKDANGDANVSDTSSDSEDEDSGPSKEECINQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKNRAEEERKEKRAAQKAAIEGFKQLLDEASEDIDDKTDSHTFRKKWGNDPRFEALDRKEREHLLNERVLPLKKATEEKAQAMRDAAADSFKSMLKEQGEITFNSRWSRVKESLRDDPRYKSVKHEDRELLFNEYISELKAVEHAAERETRAKREEQDKLRERERELRKRKEREEHEMERVRLKIRRKEAVTSFQALLVERIKDPMASWTESKPKLEKDPQGRATNSDLDSADMEKLFRDHVKMLQERRARDFRALLAEFLTSEAASQETDDGKTVLNSWSTAKRLIKSDPRYNKVPSEDREALWRRYAEDMIRRQKSSHDSKEEKHTDARGRKSLESSKNPLESGRSHERR* | 960 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mtr4g2288 | 959 | MobiDBLite | consensus disorder prediction | 422 | 443 | - | - | |
| Mtr4g2288 | 959 | MobiDBLite | consensus disorder prediction | 753 | 782 | - | - | |
| Mtr4g2288 | 959 | CDD | WW | 337 | 362 | IPR001202 | GO:0005515 | |
| Mtr4g2288 | 959 | SUPERFAMILY | FF domain | 551 | 616 | IPR036517 | - | |
| Mtr4g2288 | 959 | Gene3D | FF domain | 791 | 851 | IPR036517 | - | |
| Mtr4g2288 | 959 | Gene3D | FF domain | 852 | 919 | IPR036517 | - | |
| Mtr4g2288 | 959 | SUPERFAMILY | FF domain | 615 | 684 | IPR036517 | - | |
| Mtr4g2288 | 959 | MobiDBLite | consensus disorder prediction | 78 | 130 | - | - | |
| Mtr4g2288 | 959 | MobiDBLite | consensus disorder prediction | 1 | 146 | - | - | |
| Mtr4g2288 | 959 | Gene3D | FF domain | 622 | 679 | IPR036517 | - | |
| Mtr4g2288 | 959 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 331 | 364 | IPR001202 | GO:0005515 | |
| Mtr4g2288 | 959 | SUPERFAMILY | FF domain | 684 | 748 | IPR036517 | - | |
| Mtr4g2288 | 959 | Gene3D | FF domain | 554 | 621 | IPR036517 | - | |
| Mtr4g2288 | 959 | ProSiteProfiles | FF domain profile. | 794 | 851 | IPR002713 | - | |
| Mtr4g2288 | 959 | SUPERFAMILY | WW domain | 388 | 420 | IPR036020 | GO:0005515 | |
| Mtr4g2288 | 959 | CDD | WW | 387 | 416 | IPR001202 | GO:0005515 | |
| Mtr4g2288 | 959 | SMART | FF_2 | 691 | 745 | IPR002713 | - | |
| Mtr4g2288 | 959 | SMART | FF_2 | 853 | 918 | IPR002713 | - | |
| Mtr4g2288 | 959 | SMART | FF_2 | 794 | 851 | IPR002713 | - | |
| Mtr4g2288 | 959 | SMART | FF_2 | 623 | 678 | IPR002713 | - | |
| Mtr4g2288 | 959 | SMART | FF_2 | 556 | 610 | IPR002713 | - | |
| Mtr4g2288 | 959 | SUPERFAMILY | WW domain | 336 | 367 | IPR036020 | GO:0005515 | |
| Mtr4g2288 | 959 | MobiDBLite | consensus disorder prediction | 489 | 556 | - | - | |
| Mtr4g2288 | 959 | Gene3D | - | 375 | 434 | - | - | |
| Mtr4g2288 | 959 | ProSitePatterns | WW/rsp5/WWP domain signature. | 337 | 362 | IPR001202 | GO:0005515 | |
| Mtr4g2288 | 959 | ProSiteProfiles | FF domain profile. | 623 | 678 | IPR002713 | - | |
| Mtr4g2288 | 959 | SMART | ww_5 | 332 | 364 | IPR001202 | GO:0005515 | |
| Mtr4g2288 | 959 | SMART | ww_5 | 384 | 416 | IPR001202 | GO:0005515 | |
| Mtr4g2288 | 959 | ProSiteProfiles | FF domain profile. | 556 | 610 | IPR002713 | - | |
| Mtr4g2288 | 959 | MobiDBLite | consensus disorder prediction | 1 | 70 | - | - | |
| Mtr4g2288 | 959 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 389 | 416 | IPR001202 | GO:0005515 | |
| Mtr4g2288 | 959 | MobiDBLite | consensus disorder prediction | 489 | 522 | - | - | |
| Mtr4g2288 | 959 | Pfam | WW domain | 336 | 362 | IPR001202 | GO:0005515 | |
| Mtr4g2288 | 959 | MobiDBLite | consensus disorder prediction | 920 | 959 | - | - | |
| Mtr4g2288 | 959 | SUPERFAMILY | FF domain | 787 | 855 | IPR036517 | - | |
| Mtr4g2288 | 959 | Gene3D | - | 332 | 374 | - | - | |
| Mtr4g2288 | 959 | MobiDBLite | consensus disorder prediction | 817 | 837 | - | - | |
| Mtr4g2288 | 959 | Pfam | FF domain | 694 | 742 | IPR002713 | - | |
| Mtr4g2288 | 959 | Pfam | FF domain | 560 | 607 | IPR002713 | - | |
| Mtr4g2288 | 959 | Pfam | FF domain | 858 | 915 | IPR002713 | - | |
| Mtr4g2288 | 959 | Pfam | FF domain | 797 | 848 | IPR002713 | - | |
| Mtr4g2288 | 959 | Pfam | FF domain | 626 | 674 | IPR002713 | - | |
| Mtr4g2288 | 959 | SUPERFAMILY | FF domain | 846 | 924 | IPR036517 | - | |
| Mtr4g2288 | 959 | Coils | Coil | 746 | 798 | - | - | |
| Mtr4g2288 | 959 | ProSitePatterns | WW/rsp5/WWP domain signature. | 389 | 414 | IPR001202 | GO:0005515 | |
| Mtr4g2288 | 959 | PANTHER | TRANSCRIPTION ELONGATION REGULATOR 1 | 118 | 955 | IPR045148 | GO:0003712|GO:0070063 | |
| Mtr4g2288 | 959 | Gene3D | FF domain | 680 | 757 | IPR036517 | - | |
| Mtr4g2288 | 959 | PANTHER | TRANSCRIPTION ELONGATION REGULATOR HOMOLOG | 118 | 955 | - | - | |
| Mtr4g2288 | 959 | ProSiteProfiles | FF domain profile. | 691 | 745 | IPR002713 | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mtr4g2288 | K12824 | - | gmx:100815386 | 1315.83 |