Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2278 ATGGCAAGCATTCCTGGAAAATTTGCTCCTTCTAATGGATCTATCTATGTTTGCAACTTGCCTTATGGGACTGACGATAATATGTTGGCTGAATATTTTGGCACCATTGGAGTAATAAAGAAAGATAAACGTACAGGGAGACCTAAAATATGGTTATATCATGACAAAGAGACTAATGAACCAAAGGGAGATGCTACTGTGACATATGAGGATCCACATGCTGCCGTGGCTGCTGTTGAGTGGTTTAACAACAAAGATTTTCATGGCAATACAATTGGAGTTTATATAGCGGAGTCAAAAAACAAGGATGACCAAACATATACTGCAATAGCAGAACCGGTTGTTGCGGGTACTGATGTCGGACCAGAGGAAACTGAAAGTGATGTCGATGGTGTTAATGGAAGAGGCAGAGGTCAAATTGATGCTTCCAGCAAACCATGGCAACAAGAGGGCGATTGGATGTGTCCGAATACAAGTTGCTCGAATGTGAATTTTGCTTTTCGGGGTGCGTGTAATCGCTGTGGAAGTGCACGCCCTGCTGGTGCTTCTGGCGTTGCAGGAGGAGGTGGCCGTGGCAGGGGACGTTCTGGGCCAGATGCAGGGGGTATTGGCCGTCCAGCTGGTGCAACTGCAGGACTATTTGGTCCCAATGACTGGCCTTGTCCAATGTGTGGCAATATCAATTGGGCAAAGCGGTTAAAATGCAATATTTGCAATACAAACAAGCCTGGGCACAACGAGGGTGGTGTAAGAGGAGGGCGAGCTGGAGGTTACAAAGAGCTTGATGAAGAGGAAATTGAAGAAACTAAACGTCGTAGGCGGCAAGCTGAAGATGATGGTGAGCTGTATGATGAATTTGGAAACCTTAAGAAGAAATTCCGTGCCAAAACACAGCAATCTGAAACTGCACGAGTGCTTCCTGGTTCAGGGCGTGCTGGTTGGGAGGTTGAGGATTTAGGGATCGACAGAGACAGAGATGCTACAGAAAAAAGCAGAGACAGAGGAAGAGAGTCAAGGGACCGTTATGATGGAGAGCAGAGAAACAGAGAGCATAACGAGGAGAGGCAAAGCAGTCGAAATAGAGAGAGGGACAGGGGAAGAGATCGAGACAGGGATTATGGACGAGAACGGGACCGAAGTAGACACCGATATTAA 1155 0.4667 MASIPGKFAPSNGSIYVCNLPYGTDDNMLAEYFGTIGVIKKDKRTGRPKIWLYHDKETNEPKGDATVTYEDPHAAVAAVEWFNNKDFHGNTIGVYIAESKNKDDQTYTAIAEPVVAGTDVGPEETESDVDGVNGRGRGQIDASSKPWQQEGDWMCPNTSCSNVNFAFRGACNRCGSARPAGASGVAGGGGRGRGRSGPDAGGIGRPAGATAGLFGPNDWPCPMCGNINWAKRLKCNICNTNKPGHNEGGVRGGRAGGYKELDEEEIEETKRRRRQAEDDGELYDEFGNLKKKFRAKTQQSETARVLPGSGRAGWEVEDLGIDRDRDATEKSRDRGRESRDRYDGEQRNREHNEERQSSRNRERDRGRDRDRDYGRERDRSRHRY* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2278 384 MobiDBLite consensus disorder prediction 119 149 - -
Mtr4g2278 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 92 IPR000504 GO:0003723
Mtr4g2278 384 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 15 1 382 - -
Mtr4g2278 384 CDD RRM_SARFH 15 97 - -
Mtr4g2278 384 Coils Coil 259 279 - -
Mtr4g2278 384 SMART rrm1_1 14 95 IPR000504 GO:0003723
Mtr4g2278 384 Gene3D - 214 245 - -
Mtr4g2278 384 Gene3D - 145 182 - -
Mtr4g2278 384 MobiDBLite consensus disorder prediction 294 384 - -
Mtr4g2278 384 ProSiteProfiles Zinc finger RanBP2 type profile. 215 244 IPR001876 -
Mtr4g2278 384 SUPERFAMILY RNA-binding domain, RBD 10 102 IPR035979 GO:0003676
Mtr4g2278 384 SUPERFAMILY Ran binding protein zinc finger-like 144 181 IPR036443 -
Mtr4g2278 384 Pfam Zn-finger in Ran binding protein and others 150 179 IPR001876 -
Mtr4g2278 384 Pfam Zn-finger in Ran binding protein and others 218 244 IPR001876 -
Mtr4g2278 384 SMART zf_4 217 241 IPR001876 -
Mtr4g2278 384 SMART zf_4 151 177 IPR001876 -
Mtr4g2278 384 MobiDBLite consensus disorder prediction 316 384 - -
Mtr4g2278 384 SUPERFAMILY Ran binding protein zinc finger-like 210 245 IPR036443 -
Mtr4g2278 384 ProSitePatterns Zinc finger RanBP2-type signature. 153 174 IPR001876 -
Mtr4g2278 384 PANTHER ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED 1 382 - -
Mtr4g2278 384 ProSitePatterns Zinc finger RanBP2-type signature. 219 238 IPR001876 -
Mtr4g2278 384 MobiDBLite consensus disorder prediction 256 282 - -
Mtr4g2278 384 Gene3D - 12 95 IPR012677 -
Mtr4g2278 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 99 IPR000504 GO:0003723
Mtr4g2278 384 MobiDBLite consensus disorder prediction 182 204 - -
Mtr4g2278 384 MobiDBLite consensus disorder prediction 244 282 - -
Mtr4g2278 384 ProSiteProfiles Zinc finger RanBP2 type profile. 149 180 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2278 Mtr-Chr4 36237616 36244266 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2278 - - gmx:100780819 530.406