Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2274 ATGGCAAAGTCTTGTGATTTGCAAATCAAAATTAATGGTCAACAGATATTCCTTTTGAAAGAGAAGATTATATCAAAATATTGTGGAAAGGTGAAGAAAATCTTGAATCATCAAAAGAGAAGATCTCATGTGAAGGAGATGGGAATTAGGATCAATGATTTCCCTGGAGGCTCAGATGGATTTGAGCAAGTTTCAAGGTTTTGTTACAGCAATGGCAAAATATCAATTACTATAGACAATGTATCTCTTCTCCATTGCTGTGCAATTTATCTTGGAATGACTGAGGAAGTCTTCAACAATAATCTTTTGCAACAAACAGAAACTTTTCTTAAGGGAATCCATTACTGGAAATGGAATGACATACTTGTAAGTCTAATGAGTTGTCAAATGTTTTATGAATATGCAGATTGCTATGGTCTATTGGAGAAGATCATTAGTGCACTGTTAACAAAGATTGTCCAAAATTCAGATGCAAACCTCAACATTTCCTTCACCTCTTTATCATCATCGTCACCATCATCGTCATCAACACCGTCTTCACCGGAAAGTAATTCTGCCAAGAGATTCTCTTCTTCAACACAAACTACACCAGAAAAAATCAAGTCAACTCTGCCAAGCAAAGCATGGTGGTTTGAGGATTTGGCGACTTTGCCTCCAAAGATAATTGAGAAACTATTTCAGTGTATTCAGTCATACAAAGCTGATAGCAACAACTTAATCTTTACAAGATTTCTGTTGCAATATCTGAAAACAGCTACTCAAACAAGAGCTGTTGATTGCAGAAGCAGCGGTGAATATGCCGCTCTTGCGGAAACAGCTGCTTATGGAGTCATATTTGTTGGTAAGAAAAACTTCACTTGCAGAGGACTTTTTTGGGTATTAAGGATTGTTTCTAGGTTTGGTTTGAGTAAAGGTTGCAGAACTGAACTGGAAAAATTGATTGGTGGGATGCTTGAACAAGCTACACTGGATGATCTTTTGGTCTCTGGACATGATATGGGGATTTATTATGATGTTAACTTGGTGATAAGATTGGTTAGACAATTTGTTGATACCAATGGCTCTGATGGAATGTCTTTGCAGAAAATGAAAAGGGTTGGTAGATTAATTGACAAGTATTTGAGAGAGATATCACCTGATCAGAACCTAAAGATCTCTAAATTTCTTGGAGTTGCAGAATGTTTGCCTGATTCTGCAAGGGATTGCTTTGATGGGGTCTACAAAGCCATTGATATCTATCTTGAGTCTCATACAAATGTCCCGTTTGAGGAAAGATCAAGATTGTGCAAATGTCTTAACTATGGTAAACTCAGCTTTGGAGCCAGTAAAGATCTGGCCAAGAACCCCAGAATACCTCCAGGGGTTGCAATGCAGGCGCTTATTTCTCAACAAACTAAAATTCCAACAAGCAACTTTGTAACAGAGAGTCCAAGAAAAAGCCGTTCCCAAATAGTTTTGTATAATGAAGCCAGCATAGACGGCTTGTCCCAAGAGAAAAAACACATGAAACTAAACTTGGAGGTGTTGAAATATAAGGCAGTAGAACTGGAGAAATTCGAAGAAATGAACGGTCAGATTTCAAATATGTTTAGCCGCAATGTTTTGCTCAATCATGTTCGGGCAAGAGTTTTGCCAAGATATTGTTGA 1647 0.3758 MAKSCDLQIKINGQQIFLLKEKIISKYCGKVKKILNHQKRRSHVKEMGIRINDFPGGSDGFEQVSRFCYSNGKISITIDNVSLLHCCAIYLGMTEEVFNNNLLQQTETFLKGIHYWKWNDILVSLMSCQMFYEYADCYGLLEKIISALLTKIVQNSDANLNISFTSLSSSSPSSSSTPSSPESNSAKRFSSSTQTTPEKIKSTLPSKAWWFEDLATLPPKIIEKLFQCIQSYKADSNNLIFTRFLLQYLKTATQTRAVDCRSSGEYAALAETAAYGVIFVGKKNFTCRGLFWVLRIVSRFGLSKGCRTELEKLIGGMLEQATLDDLLVSGHDMGIYYDVNLVIRLVRQFVDTNGSDGMSLQKMKRVGRLIDKYLREISPDQNLKISKFLGVAECLPDSARDCFDGVYKAIDIYLESHTNVPFEERSRLCKCLNYGKLSFGASKDLAKNPRIPPGVAMQALISQQTKIPTSNFVTESPRKSRSQIVLYNEASIDGLSQEKKHMKLNLEVLKYKAVELEKFEEMNGQISNMFSRNVLLNHVRARVLPRYC* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2274 548 Pfam NPH3 family 209 441 IPR027356 -
Mtr4g2274 548 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 2 522 - -
Mtr4g2274 548 MobiDBLite consensus disorder prediction 166 200 - -
Mtr4g2274 548 ProSiteProfiles NPH3 domain profile. 208 466 IPR027356 -
Mtr4g2274 548 PANTHER OS12G0117600 PROTEIN 2 522 IPR043454 -
Mtr4g2274 548 SUPERFAMILY POZ domain 4 95 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2274 Mtr-Chr4 36203504 36206103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2274 4 470 EF-hand Containing Proteins AT3G44820 27.022 2.08e-50 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2274 - - gmx:100808259 810.831