Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2260 ATGCCAATCCCATTCAAGCGCTTCAAACCCACCGATCTATGCATCGTCAAACCCATTCTCTCTTCCAAAACCCATCTCTCCGACGCTGTTTCTTCTCTTGACGTTTTACATCCCAGAGGCATTCGTTTATCTTCTCACATTCTCGCTACTCTATTGCGCCGTTGTTCTGATACCAAGTCATATAAAGAGGGTAAGCTTGTTCATCTTCATCTGAAGCTTACCGGTTTTAAACGACCCACTACACTTATTGCCAATCATTTGATTCATATGTATTTTTGTTGCGGTGATTATGTTCGTGCACGTAAGGTGTTTGATAAAATGGATGTTAGAAATTTGTATTCTTGGAATAATATGATTTCTGGGTATGTTAAATTAGGGATGATGAAACAAGCTAGGGGTGTGTTTTATAAAATGCCGGAGAAGGATTGTGTGTCGTGGAATGCGATGGTGGTTGGTTATGCGCATTGTGGGAGGTTTAGTGAGGCTTTGAGGTTTTATGGATGGATGAGAAGGGTTTGTGTTGGATATAATGAGTTTACGTTTGCTAGTGTTTTGATTGTTTGTGTGAAGTTGAAAGAGTTTGAACTTTGTAGACAGATTCATGGGCAGGTTGTAGTTGTTGGGTTTTTGTCGAATGTGGTTGTTTCTAGCTCAATTGTAGATGCTTATGCAAAATGTGGTAAAATGGAAGATGCTATGAGATTGTTTGATGATATGACTGTGAGGGATATTCCTGCTTGGACGACGTTAGTTTCAGGATATGCTTTATGTGGGGATATGGATTCAGCTGCTGAAATGTTTAGTCAGATGCCTAAGAAAAATACATATTCGTGGACGGCTTTGATCGGTGGATATGCGAGAAATGGTATGGCTCATAAAGCTCTTGGAGTGTTTAGAAAGATGATCATGCATCGAGTTAGGCCTGATGAATTTACATTCAGTAGTTGCCTTTTTGCTTGTGCCACTATTGCTTCACTGAAGCATGGTAAACAAATACATGCATTTTTGTTAAGGAACAACATCAGACCTAATCCTGTTGTTGTTAGTGCTGTTGTTGACATGTATGCAAAATGTGGAAGCATGGAGACTGCCAGGCGTATCTTTAATTTCACTGAACATATGCAAGATGTAGTGTTATGGAACACTATGATATCAGCACTGGCTCACTATGGCTATGGTAAAGAAGCAGTTTTGATGCTCAATGATATGCTGAAATCAGGAGTGAAGCCAAATAGGAATACTTTGGTTGCCATTCTAAATGCTTGTAGTCATTCCGGCCTTGTTTGTGATGGGCTTCAGTTTTTCAAGTCCATGACTAATGATCATGGTGTTATCCCAGACCTAGAACACTACGCACACCTAATTGATCTTTTGGGTCGAGCTGGATGTTTTGTTGAATCGATGAAGGATCTATTCATGATAGATTGTAAACCAGGTGACCATGTTTTGTATTCTTTGCTGTGTGTATGTAGACCGAATGGTAGTATAGGTGTCGGAAGAGAAGTAGCTGAATTCCTTATCAAATGGCAGCCTCACTCTTCTGCTGCTTATGGATTACTTTCCAGTATATATGCTGCACTTGTGACATGGGGATTGGTTGACGAAGCAAGACATATTATGGATGAGAGACGCCTTAGGCAAGATCGGTCTACTAGTTGGATCGAAATTGAAAATGAAGTCCATGCTTTCACCGTATCAGATGGATTGCACCCTTTGAAGGAAACATTATACTCAGCTTTGGGGCACTTAAATAACCAGATAGAGGACAATGCCCCATACCTAACTGAAACATAG 1794 0.403 MPIPFKRFKPTDLCIVKPILSSKTHLSDAVSSLDVLHPRGIRLSSHILATLLRRCSDTKSYKEGKLVHLHLKLTGFKRPTTLIANHLIHMYFCCGDYVRARKVFDKMDVRNLYSWNNMISGYVKLGMMKQARGVFYKMPEKDCVSWNAMVVGYAHCGRFSEALRFYGWMRRVCVGYNEFTFASVLIVCVKLKEFELCRQIHGQVVVVGFLSNVVVSSSIVDAYAKCGKMEDAMRLFDDMTVRDIPAWTTLVSGYALCGDMDSAAEMFSQMPKKNTYSWTALIGGYARNGMAHKALGVFRKMIMHRVRPDEFTFSSCLFACATIASLKHGKQIHAFLLRNNIRPNPVVVSAVVDMYAKCGSMETARRIFNFTEHMQDVVLWNTMISALAHYGYGKEAVLMLNDMLKSGVKPNRNTLVAILNACSHSGLVCDGLQFFKSMTNDHGVIPDLEHYAHLIDLLGRAGCFVESMKDLFMIDCKPGDHVLYSLLCVCRPNGSIGVGREVAEFLIKWQPHSSAAYGLLSSIYAALVTWGLVDEARHIMDERRLRQDRSTSWIEIENEVHAFTVSDGLHPLKETLYSALGHLNNQIEDNAPYLTET* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2260 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Mtr4g2260 597 Gene3D Tetratricopeptide repeat domain 19 141 IPR011990 GO:0005515
Mtr4g2260 597 Gene3D Tetratricopeptide repeat domain 142 242 IPR011990 GO:0005515
Mtr4g2260 597 Pfam PPR repeat 347 369 IPR002885 -
Mtr4g2260 597 Pfam PPR repeat 85 111 IPR002885 -
Mtr4g2260 597 Pfam PPR repeat 113 143 IPR002885 -
Mtr4g2260 597 Pfam PPR repeat 217 243 IPR002885 -
Mtr4g2260 597 Pfam PPR repeat 144 167 IPR002885 -
Mtr4g2260 597 TIGRFAM PPR: pentatricopeptide repeat domain 378 411 IPR002885 -
Mtr4g2260 597 TIGRFAM PPR: pentatricopeptide repeat domain 113 144 IPR002885 -
Mtr4g2260 597 TIGRFAM PPR: pentatricopeptide repeat domain 246 273 IPR002885 -
Mtr4g2260 597 TIGRFAM PPR: pentatricopeptide repeat domain 276 310 IPR002885 -
Mtr4g2260 597 TIGRFAM PPR: pentatricopeptide repeat domain 144 169 IPR002885 -
Mtr4g2260 597 TIGRFAM PPR: pentatricopeptide repeat domain 218 244 IPR002885 -
Mtr4g2260 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Mtr4g2260 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Mtr4g2260 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Mtr4g2260 597 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 33 270 - -
Mtr4g2260 597 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 175 567 - -
Mtr4g2260 597 Gene3D Tetratricopeptide repeat domain 373 564 IPR011990 GO:0005515
Mtr4g2260 597 Gene3D Tetratricopeptide repeat domain 243 333 IPR011990 GO:0005515
Mtr4g2260 597 Pfam PPR repeat family 376 423 IPR002885 -
Mtr4g2260 597 Pfam PPR repeat family 273 321 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2260 Mtr-Chr4 36075149 36078019 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2260 126 588 Glycoside Hydrolase AT3G49170 32.043 1.53e-78 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2260 - - lja:Lj3g3v3500060.1 873.618