Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2250 ATGGGTCGATTTCTTCTCTTTCTCATTTTTATCAGCTTCCTTACATTATCTTTTGTCTCAGAGGTACAAACAACGTCGTTCAAGATTGTAAACAAGTGCCGTTACACAATATGGCCAGGATTACTCTCCGGCGCTACTTCACCGCCGCTACCCACCACCGGATTCACTCTCAAGAGTGGAAATTCAAGGACTATACAAATCCCGAAAGCTTGGTCGGGTCGGATATGGGCACGAACACTCTGCGGTCAAGACTCTGACAGAAAGTTTTCATGTATCACTGCCGACTGTGGCTCCGGCAAAGTAGCCTGCGCCGGAGGTGGTGCCAAACCTCCGGCAACATTAGCAGAGTTCACCTTGAACGGAGCTGATGGGCTGGACTTCTACGACGTGAGTTTGGTTGACGGTTATAATATTCCGATGCTGATCGTGGCGAAAGGAGGGACAAGAGGTGGCTGCAGCCCTACTGGTTGTCTTGTGGATCTTAACGGTGGTTGTCCGGTGGATTTGAAGGTAGCGCGTGGGAATGGGAGTGGTGGTGGCGTTGCGTGTAGAAGCGCGTGTGAGGCTTTTGGGGATCCTCGTTATTGTTGTAGTGAGGAGTATTCTACGCCTGACACGTGTGGTCCTTCTGTTTACTCGTTGTTTTTTAAACATGCTTGCCCACGCGCTTATAGCTACGCGTATGATGATAAGACCAGTACTTATACATGTGCTTCTGCTGACTATTTGATTGTGTTTTGCCCCTTGCCTTATACAAGCCAAAAAGTGTTGGGAGCAAGGAAAGATGGAGCACCGCTTCCTCTTGTAAACAAAACTATGATGTACTTACCAAAACAACATTCTGGCGGTTCTTCGTCGACAGGCAGAAAGTAA 873 0.4822 MGRFLLFLIFISFLTLSFVSEVQTTSFKIVNKCRYTIWPGLLSGATSPPLPTTGFTLKSGNSRTIQIPKAWSGRIWARTLCGQDSDRKFSCITADCGSGKVACAGGGAKPPATLAEFTLNGADGLDFYDVSLVDGYNIPMLIVAKGGTRGGCSPTGCLVDLNGGCPVDLKVARGNGSGGGVACRSACEAFGDPRYCCSEEYSTPDTCGPSVYSLFFKHACPRAYSYAYDDKTSTYTCASADYLIVFCPLPYTSQKVLGARKDGAPLPLVNKTMMYLPKQHSGGSSSTGRK* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2250 290 Gene3D Thaumatin 25 248 IPR037176 -
Mtr4g2250 290 PIRSF PR5 1 278 IPR001938 -
Mtr4g2250 290 CDD TLP-PA 26 247 - -
Mtr4g2250 290 Pfam Thaumatin family 31 248 IPR001938 -
Mtr4g2250 290 SMART tha2 27 248 IPR001938 -
Mtr4g2250 290 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 6 259 - -
Mtr4g2250 290 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Mtr4g2250 290 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Mtr4g2250 290 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Mtr4g2250 290 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Mtr4g2250 290 ProSiteProfiles Thaumatin family profile. 24 248 IPR001938 -
Mtr4g2250 290 PANTHER OS03G0233200 PROTEIN 6 259 IPR001938 -
Mtr4g2250 290 SUPERFAMILY Osmotin, thaumatin-like protein 26 248 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2250 Mtr-Chr4 35966084 35970163 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2250 5 248 Receptor kinase-like Gene Family AT5G38280 50.000 1.30e-83 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2250 - - ccaj:109798931 512.301