Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2233 ATGGAAACTCGTAGTCGGAAGCGGGCGGAGGCTTCCTCAGCTGCCCCTTCATCCTCTTCATCATCTCCCAAATCTCGTTCCACCAAACGTCCTCGTCTTTCTTCTTCTTCTTCCTCCACCGCTGCCGCCGCAACAACCACCGTAACAGCCACTGCTACACCAACGCCAACCACCAATACTCGTACACGCGCTTCCAGAACAAAGAACACTCTTCCTCCTCCTATGGACTCGAACAATGAATCATCATCCGGTTCGCGGCGCCGCGGAAAGAATCCTGAAAGGGATAATTCGGATAAGGGAAAAGAGAAGGAACACGATGTTAGGGCTAGGAATGAAAGGGATGCTGAGAAAGGTTTGGTTTTGAATGTTGAAGCTGGTGCTGGTGATGGGGACGATGATGATAGTGACAGTGGTGTTGGAACATTGCATCAGAATTTAACATCTGCAAGCAGTGCACTACAAGGGTTGCTTCGCAAACTCGGTGCTGGTTTGGATGATTTGCTACCATCATCTGGAATGGGCTCTTCATCTCATCAGAGTGGGAGGTTGAAGAAGATTTTGTTTGGGTTAAGGGCTGAAGGGGAAGAAGGGAGACAAGTTGAGGCTTTGACTCAGCTCTGTGAAATACTATCTATTGGGACTGAGGATTCATTGAGTACTTTTTCGGTTGATTCATTTGTGCCAGTGCTTGTTGGGTTGCTGAATCATGAGAGTAATCCTGATATAATGCTGCTTGCAGCGAGGGCGCTGACACATCTATGTGATGTGCTGCCTTCGTCGTGTGCTGCTGTTGTGCATTATGGAGCTGTTTCAATATTCTGCGCGAGGTTGCTTACCATAGAGTATATGGATTTAGCTGAGCAGTCCCTTCAAGCTCTAAAGAAGATATCCCAGGAGCACCCAACTGCATGCCTACGAGCCGGGGCTCTCATGGCCGTGCTGTCTTATTTGGACTTCTTCTCAACTGGAGTTCAGCGTGTTGCATTGTCTACTGCTGCAAATATGTGTAAGAAGCTTCCTTCAGATGCATCTGACTTTGTGATGGAAGCTGTTCCTCTTCTGACTAACCTCCTTCAGTACCATGATGCCAAGGTCCTGGAGCATGCCTCTGTTTGTTTGACTCGAATAGCTGAAGCATTTGCATCATCTTCGGACAAGTTAGATGAATTATGCAATCATGGACTGGTAACACAAGCTGCCTCACTCATTTCTAACAGCAGTTCTGGAGGTGGACAGGCTTCTCTCAGTACACCAACATATACAGGTTTAATCCGACTTCTTTCAACTTGTGCAAGCGGGTCTCCTCTTGGTTCTAAAACTCTGCTTCTTCTCGGAATTAGCCGTATTCTTAAAGATATTCTCTCTGGTTCTGGAGATTCTTCTAATGATTCTGTTTCTCCTGCATTAAGTAGGCCGCCGGAGCAGATATTTGAGATTGTAAACCTGACAAATGAGCTTCTCCCTCCATTGCCGCAAGGAACTATTTCCCTCCCTGTCAGCACCAATTTTGTGAAGGGGCCTGTTGTAAAAAAGTCTCCTGCCGGCAGTTCTGTGCAACAAGAAGACACAAATGGAAATGTTCCTGAGATATCGGCTCGTGAGAAGCTATTAAATGAGCAACCTGAGCTACTTGGGCAATTTGGGATGGATCTCCTCCCCGTTTTAATACAGATATATGGTTCGAGTGTCAACATACCTGTTCGTCACAAATGTCTTTCGGTCATTGGAAAGTTGATGTATTTCAGCCCATCGGAGATGATCCAGTCTTTGTTAAGCGTGACAAATATATCAAGTTTCTTAGCTGGAGTCTTGGCATCAAAAGATTCACATGTATTGACACCTGCCTTGCAAATTGCTGAAATTCTTATGGAAAAGCTGCCCGAGACATTCTCTAAGATGTTTATCAGAGAAGGTGTCGTCCATGCAGTGGACCAACTTATTTTGCCTGGAAATTCAACCAATGTCTCTACACAAGCATCTTCAGCAGAGAAGGATACTGATTCTATGCCTGGAGCATCATCCCGCCCTAGGCGTAATCGGCGACGCTCTGGCAACTCCAATCCTGACGGAGACGATTTGAAGAGTCCTGTTTCAGTAAATGTTGGTTCACCTCCAAGTTCTGCGAATATTCCAACAGCAGGTTCTAGCATCCGGTTATCTGTTAGTGCAGCTGCAAAAACTTTCAAGGATCAGTACTTTCCTTCGGAACCTGGGGCTGTTGAAGTAGGTGTTACTGACGATCTTTTGCATCTGAAAAATCTTTGCATGAAGTTAAATGGTGGTGTTGATGACCAAAGGACTAATGGTAAAGGGAAATCTAAAACTTTTGGACTTGGTCTGGAGGAGGGTTTAATCGGGGTCATATCTGAAATGCTAAAGGAACTTGGCAAAGGAGATGGTGTATCCACTTTTGAATTTATTGGTAGCGGTGTTGTTGCAGCTTTGCTAAATTATTTTTCTTGTGGGTATTTCTCTAAAGATAGACCCTCAGAAACCCACCTGCCTAAGCTTCGCAAACAAGCACTCACAAGGTTTAAATTATTTATTACTGTTGCACTGCCTACCGCTATTGACAATAGGGATGCAGCTCCTATGACTGTCTTGGTTCAAAAGCTTCAAAATGCTTTGTCCTCCATGGAGCGTTTCCCTGTTTTGCTGAGTCAATCACCTAGGTCATCCAGTGGAAGTGCACGCCTTTCCTCTGGACTAAGCGCATTATCGCATCCCTTCAAATTGCGTCTTTGTCGAGCCCAGGGAGAGAAGTCACTTAAGGATTATTCAAATAATGTTGTATTGATTGATCCATTAGCTAGTTTAGCAGCCATTGAGGAATTTCTTTGGCCTCGTATCCAACGAAGTGAATCTGTTCAGAAGTCCACTGCACCTGCCGGGAATTCTGAATCTGGGACAAGTCCTGTTGGTGCTGGTGTTCCACCTCCTTCTACCTCTACTCCGTCCACTACCCGTCGTCATTCTACAAGATCCAGATCATCTGCTAGTTTAGGGGACACTTCCAAAAAAGAATCAACTCAAGACAAAACCTCGAGCTCATCTAAAGGTAAGGGGAAAGCTGTATTAAAGCCTGCCCAAGAGGAGGCAAGAGGACCTCAAACCAGAAATGCTTCACGCAGAAGAGCAGCTCTTGATAAAGATGTTCAAATGAAGCCTGCAAATGGGGATTCTACATCTGAGGATGAAGATTTAGACATATCTCCTGTTGAAATTGATGAGGCTTTGGTGATCGAAGATGACGATGATATTTCTGATGATGAAGATGATGACCATGACGACATGCTGAGGGATGACTCCCTTCCTGTTTGCTTACCTGAGAAAGTACATGATGTGAAATTGGGCGACTCAGCTGAGGAGAGTACTGCTACTCCTGCAACCAATGATGGCCAGACTAATGCAGCTTCTGGTTCTAGTAGCAAAGTTGGTTCAGTCAGGGGATCAGACCCCACAGATTTTAGGAGTGGCTATTCTTCTAGCTCACGAGGTGCAATGTCATTTGCTGCTGCTGCTATGGCTGGACTTGGATCTGCCAATAGCAGAGGAATCAGAGGGGGAAGAGACCGGCACGGGCGTCCCTTGTTTGGTAGTTCTAATGATCCTCCAAAGTTAATATTCACTGCTGGTGGGAAACAATTGAACAGACAGTTGACTATTTATCAAGCAGTTCAAAGACAGCTTGTACAAGATGACGATGATGATGAGAGATTTGCTGGCAGTGACTTTGTGTCGAATGATGGAAGCAGGATGTGGGGCGACATTTTCACAATCACTTATCAGAAGGCAGATGGCCAAACAGATAGGGCTTCCCCAGGAGGCGCAAGTTCTAACACTTCAAAATCTAGTAAATCTGGGTCTGCATCAAATTCCAGTTCTGAAGTCAAGCTGCATCAGACATCTGTAGTAGATAGTATCTTGCAAGGAGAATTGCCTTGTGAGCTGGAGAAATCTAATCCCACATACGATATATTGGCTCTACTCCGTGTACTCGAGGGTTTGAACCAGCTTGCACCTCGTTTGAGGGCCCAAGTGGCTACTGATGGCTTTGCCGAGGGTAAACTTTTGGATTTAGATGAGCTAGTCGTTGCCACAGGTTCTAAGGTTCCTCCGGAAGAATTTATAAGCAGCAAGCTTACTCCAAAATTAGCCAGGCAGATACAAGATGCCCTTGCCCTATGCAGTGGGAGTCTACCCTCATGGTGTTACCAGTTAACAAAAGCGTGTCCTTTTTTGTTTCCATTTGAGATCCGAAGACAATACTTCTATTCAACTGCCTTTGGGTTATCTCGTGCGCTGTATCGGCTCCAGCAGCAGCAGGGTGCCGATGGGCATGGATCAACAAATGAAAGAGAGGTTAGGGTTGGAAGGCTGCAGCGCCAGAAGGTTCGTGTCTCCCGAAACCGCATTTTGGATTCCGCTGCTAAAGTGATGGAATTGTATTCTAGCCAAAAGGCTGTACTTGAAGTAGAATATTTTGGGGAAGTTGGCACTGGCCTTGGTCCCACCCTTGAGTTCTATACACTTCTAAGTCACGACTTACAGAAAGTTGGACTTCAAATGTGGAGGTCAGGTTCTGATCACATGGAAATTGATGGAGATGAAAAGAAAAAGAAAAGCAGTGAAGGCAATATTGCTAGAGATGGAGAACTTGTTCAAGCTCCTCTTGGGTTGTTTCCTCGTCCCTGGCCTGCAAATGCTGATGCGTCAGAGGGTAGCCAGCTTTTCAAAGTGATTGAATATTTCCGGCTTTTAGGCCGCGTAGTTGCTAAAGCACTTCAGGATGGACGTCTATTAGATTTGCCATTATCTGTAGCATTTTATAAGCTTGTTCTTGGTCAAGATCTTGATTTGCACGACATTCTTTACGTTGACGCTGAACTTGGGAAAACTTTGCAAGAGTTGAATGCCCTTGTTTGTCGGAAACATAATATTGAATCTATTGGTGGTGGTAATACTGGTACAGTATCAAATTTGCATTATCGTGGAGCTCCAATTGCAGATCTCTGTTTGGATTTTACCCTTCCTGGTTATCCAGAGTATACCTTGAAACCTGGGGATGAAATTGTTGACCTCAATAATCTAGAGGATTATATATCCATGGTTGTTGATGCCACTGTCAAGACTGGAATAACGCGCCAACTGGAAGCCTTTAGAGCAGGGTTCAATCAGGTTTTTGACATCTCATCTTTACAAATATTTACGCCTCATGAATTGGATTATTTGCTTTGCGGCCGTAGAGAATTATGGAAGACAGAGACACTAGCTGATCATATCAAATTTGACCATGGGTACACTGCCAAGAGCCCCGCAATAGTGAATTTACTTGAAATTATGGGAGAGTTCACACCGGAGCAGCAGCGTGCCTTCTGTCAATTTGTTACTGGAGCACCTAAGCTACCACCTGGTGGGCTGGCTGTTCTAAATCCAAAATTAACGATTGTGAGAAAGCTCTCGTCAACTGCAGCCAATACTACATCCAATGGTAACGGACCTTCAGAAACAGCAGATGATGACTTGCCAAGTGTGATGACTTGTGCTAATTACCTGAAGCTTCCTCCTTATTCTACCAAGGAAATTATGCACAAGAAGCTAATGTATGCAATCAATGAAGGCCAGGGATCCTTTGATTTATCATGA 5646 0.4492 METRSRKRAEASSAAPSSSSSSPKSRSTKRPRLSSSSSSTAAAATTTVTATATPTPTTNTRTRASRTKNTLPPPMDSNNESSSGSRRRGKNPERDNSDKGKEKEHDVRARNERDAEKGLVLNVEAGAGDGDDDDSDSGVGTLHQNLTSASSALQGLLRKLGAGLDDLLPSSGMGSSSHQSGRLKKILFGLRAEGEEGRQVEALTQLCEILSIGTEDSLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDASDFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSSDKLDELCNHGLVTQAASLISNSSSGGGQASLSTPTYTGLIRLLSTCASGSPLGSKTLLLLGISRILKDILSGSGDSSNDSVSPALSRPPEQIFEIVNLTNELLPPLPQGTISLPVSTNFVKGPVVKKSPAGSSVQQEDTNGNVPEISAREKLLNEQPELLGQFGMDLLPVLIQIYGSSVNIPVRHKCLSVIGKLMYFSPSEMIQSLLSVTNISSFLAGVLASKDSHVLTPALQIAEILMEKLPETFSKMFIREGVVHAVDQLILPGNSTNVSTQASSAEKDTDSMPGASSRPRRNRRRSGNSNPDGDDLKSPVSVNVGSPPSSANIPTAGSSIRLSVSAAAKTFKDQYFPSEPGAVEVGVTDDLLHLKNLCMKLNGGVDDQRTNGKGKSKTFGLGLEEGLIGVISEMLKELGKGDGVSTFEFIGSGVVAALLNYFSCGYFSKDRPSETHLPKLRKQALTRFKLFITVALPTAIDNRDAAPMTVLVQKLQNALSSMERFPVLLSQSPRSSSGSARLSSGLSALSHPFKLRLCRAQGEKSLKDYSNNVVLIDPLASLAAIEEFLWPRIQRSESVQKSTAPAGNSESGTSPVGAGVPPPSTSTPSTTRRHSTRSRSSASLGDTSKKESTQDKTSSSSKGKGKAVLKPAQEEARGPQTRNASRRRAALDKDVQMKPANGDSTSEDEDLDISPVEIDEALVIEDDDDISDDEDDDHDDMLRDDSLPVCLPEKVHDVKLGDSAEESTATPATNDGQTNAASGSSSKVGSVRGSDPTDFRSGYSSSSRGAMSFAAAAMAGLGSANSRGIRGGRDRHGRPLFGSSNDPPKLIFTAGGKQLNRQLTIYQAVQRQLVQDDDDDERFAGSDFVSNDGSRMWGDIFTITYQKADGQTDRASPGGASSNTSKSSKSGSASNSSSEVKLHQTSVVDSILQGELPCELEKSNPTYDILALLRVLEGLNQLAPRLRAQVATDGFAEGKLLDLDELVVATGSKVPPEEFISSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFEIRRQYFYSTAFGLSRALYRLQQQQGADGHGSTNEREVRVGRLQRQKVRVSRNRILDSAAKVMELYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVGLQMWRSGSDHMEIDGDEKKKKSSEGNIARDGELVQAPLGLFPRPWPANADASEGSQLFKVIEYFRLLGRVVAKALQDGRLLDLPLSVAFYKLVLGQDLDLHDILYVDAELGKTLQELNALVCRKHNIESIGGGNTGTVSNLHYRGAPIADLCLDFTLPGYPEYTLKPGDEIVDLNNLEDYISMVVDATVKTGITRQLEAFRAGFNQVFDISSLQIFTPHELDYLLCGRRELWKTETLADHIKFDHGYTAKSPAIVNLLEIMGEFTPEQQRAFCQFVTGAPKLPPGGLAVLNPKLTIVRKLSSTAANTTSNGNGPSETADDDLPSVMTCANYLKLPPYSTKEIMHKKLMYAINEGQGSFDLS* 1882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2233 1881 MobiDBLite consensus disorder prediction 954 1005 - -
Mtr4g2233 1881 MobiDBLite consensus disorder prediction 1265 1298 - -
Mtr4g2233 1881 SUPERFAMILY ARM repeat 183 656 IPR016024 -
Mtr4g2233 1881 MobiDBLite consensus disorder prediction 689 713 - -
Mtr4g2233 1881 SUPERFAMILY Hect, E3 ligase catalytic domain 1455 1874 IPR035983 GO:0004842
Mtr4g2233 1881 Gene3D Hect, E3 ligase catalytic domain 1753 1879 - -
Mtr4g2233 1881 MobiDBLite consensus disorder prediction 1123 1163 - -
Mtr4g2233 1881 MobiDBLite consensus disorder prediction 653 713 - -
Mtr4g2233 1881 Gene3D Hect, E3 ligase catalytic domains 1404 1643 - -
Mtr4g2233 1881 Pfam HECT-domain (ubiquitin-transferase) 1511 1881 IPR000569 GO:0004842
Mtr4g2233 1881 ProSiteProfiles HECT domain profile. 1581 1881 IPR000569 GO:0004842
Mtr4g2233 1881 Gene3D - 531 662 IPR011989 -
Mtr4g2233 1881 MobiDBLite consensus disorder prediction 653 668 - -
Mtr4g2233 1881 SMART hect_3 1474 1881 IPR000569 GO:0004842
Mtr4g2233 1881 MobiDBLite consensus disorder prediction 124 143 - -
Mtr4g2233 1881 SMART arm_5 214 255 IPR000225 GO:0005515
Mtr4g2233 1881 SMART arm_5 297 337 IPR000225 GO:0005515
Mtr4g2233 1881 SMART arm_5 340 378 IPR000225 GO:0005515
Mtr4g2233 1881 MobiDBLite consensus disorder prediction 1 119 - -
Mtr4g2233 1881 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 54 1881 - -
Mtr4g2233 1881 MobiDBLite consensus disorder prediction 1119 1163 - -
Mtr4g2233 1881 MobiDBLite consensus disorder prediction 1181 1205 - -
Mtr4g2233 1881 MobiDBLite consensus disorder prediction 10 85 - -
Mtr4g2233 1881 MobiDBLite consensus disorder prediction 86 119 - -
Mtr4g2233 1881 MobiDBLite consensus disorder prediction 954 1107 - -
Mtr4g2233 1881 MobiDBLite consensus disorder prediction 1037 1051 - -
Mtr4g2233 1881 Gene3D - 173 490 IPR011989 -
Mtr4g2233 1881 MobiDBLite consensus disorder prediction 1063 1098 - -
Mtr4g2233 1881 CDD HECTc 1463 1876 IPR000569 GO:0004842
Mtr4g2233 1881 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 54 1881 IPR045322 GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2233 Mtr-Chr4 35747146 35757651 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2233 K10590 - gmx:100783336 2870.11