Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2230 ATGTGGCCAGATATTCTTGATAAAGCAAGACGTGGAGGACTAAACTTAATCCAAACATATGTATTTTGGAATGGTCATGAACCTGAGAAAGACAAGGTGAATTTCGAAGGCCGGTATGATTTGGTGAAATTCCTTAAGCTTGTACAAGAGAAAGGAATGTATGTTACCCTTAGAATTGGCCCTTTCATCCAAGCTGAATGGAATCACGGAGGACTTCCATATTGGCTAAGAGAGGTCCCTGACATCATATTCCGTTCTAACAATGAACCTTTTAAGAAATACATGAAAGAATATGTATCAATTGTTATAAATAGAATGAAAGAAGAAAAACTCTTTGCTCCTCAAGGAGGCCCTATCATCTTGGCTCAGATTGAGAATGAGTACAACCACATCCAACTTGCTTATGAAGCTGATGGAGATAATTATGTTCAGTGGGCTGCAAAAATGGCAGTTTCACTATATAATGGAGTTCCATGGGTCATGTGCAAGCAGAAGGATGCTCCTGATCCAGTTATTAATGCATGCAATGGAAGGCACTGTGGTGATACCTTTACAGGTCCAAACAAACCATACAAACCTTTCATATGGACTGAAAACTGGACTGCTCAGTATAGAGTATTTGGAGATCCACCATCTCAAAGATCTGCAGAAGACATTGCCTTCTCAGTTGCTCGCTTCTTCTCTAAGCATGGATCTTTAGTCAACTACTATATGTATCACGGTGGAACAAATTTTGGTAGAACAACCTCAGCCTTTACAACAACACGTTACTACGACGAAGCTCCTCTTGATGAGTTTGGCCTACAAAGAGAACCAAAATGGAGTCACCTAAGGGATGCGCACAAGGCTGTAAACCTATGTAAGAAGTCTCTACTCAATGGTGTGCCTACCACACAAAAAATTAGCCAGTATCATGAGGTTATAGTCTATGAAAAGAAAGAAAGTAATTTATGTGCTGCTTTCATCACTAACAACCACACCCAAACAGCAAAAACATTAAGTTTCAGAGGTTCAGACTATTTTTTGCCACCACGTTCCATCAGCATTCTTCCTGATTGCAAGACTGTGGTCTTCAACACTCAAAATATTGCTTCACAACACAGTTCAAGACACTTTGAGAAATCAAAGACTGGAAACGATTTCAAGTGGGAGGTGTTTTCTGAGCCTATACCAAGTGCCAAGGAATTGCCATCCAAACAAAAACTTCCTGCAGAACTTTACAGCTTGCTTAAGGACAAAACTGATTATGGGTGGTACACCACGAGTGTGGAGTTGGGTCCAGAAGACATACCAAAGAAGAGTGATGTAGCACCCGTTCTTCGTATTCTGAGTCTTGGACATTCATTGCAGGCCTTTGTAAACGGAGAATACATCGGATCCAAACATGGTAGCCATGAAGAGAAAGGTTTTGAATTCCAGAAACCTGTAAACTTTAAGGTTGGAGTTAACCAGATAGCTATCTTGGCTAATTTAGTAGGACTACCTGATAGTGGAGCATACATGGAACACAGATATGCTGGACCTAAGACTATAACCATCCTAGGTTTGATGTCTGGAACAATTGACCTCACTTCTAATGGTTGGGGTCATCAGGTTGGTCTCCAAGGTGAGAATGATAGCATTTTCACCGAGAAGGGATCAAAGAAAGTAGAATGGAAAGATGGCAAGGGAAAAGGATCAACTATCTCCTGGTACAAGACAAATTTTGATACACCAGAAGGAACAAACCCAGTTGCCATCGGAATGGAAGGTATGGCAAAAGGAATGATTTGGGTTAATGGTGAAAGCATTGGTCGTCACTGGATGAGCTACCTCTCTCCTCTTGGAAAGCCTACTCAATCAGAGTACCACATTCCAAGATCTTTCCTTAAACCAAAAGACAACTTGCTTGTAATATTCGAAGAAGAGGCAATAAGTCCAGACAAGATTGCTATACTAACTGTCAACAGAGATACAATATGCAGTTTCATCACAGAGAATCACCCTCCTAATATTAGGTCATTTGCAAGTAAGAACCAAAAACTCGAACGTGTGGGGGAGAATCTGACTCCAGAAGCTTTTATCACGTGTCCGGACCAGAAAAAAATTACGGCTGTTGAGTTTGCAAGCTTTGGTGATCCTTCGGGTTTCTGTGGAAGCTTTATTATGGGAAAATGTAATGCACCTTCCTCCAAGAAGATTGTTGAGCAGCTATGCTTAGGAAAACCAACTTGTTCGGTTCCAATGGTCAAAGCAACTTTCACCGGTGGCAATGATGGTTGTCCAGATGTTGTGAAGACGCTTGCAATCCAAGTGAAGTGTGGATGA 2307 0.4114 MWPDILDKARRGGLNLIQTYVFWNGHEPEKDKVNFEGRYDLVKFLKLVQEKGMYVTLRIGPFIQAEWNHGGLPYWLREVPDIIFRSNNEPFKKYMKEYVSIVINRMKEEKLFAPQGGPIILAQIENEYNHIQLAYEADGDNYVQWAAKMAVSLYNGVPWVMCKQKDAPDPVINACNGRHCGDTFTGPNKPYKPFIWTENWTAQYRVFGDPPSQRSAEDIAFSVARFFSKHGSLVNYYMYHGGTNFGRTTSAFTTTRYYDEAPLDEFGLQREPKWSHLRDAHKAVNLCKKSLLNGVPTTQKISQYHEVIVYEKKESNLCAAFITNNHTQTAKTLSFRGSDYFLPPRSISILPDCKTVVFNTQNIASQHSSRHFEKSKTGNDFKWEVFSEPIPSAKELPSKQKLPAELYSLLKDKTDYGWYTTSVELGPEDIPKKSDVAPVLRILSLGHSLQAFVNGEYIGSKHGSHEEKGFEFQKPVNFKVGVNQIAILANLVGLPDSGAYMEHRYAGPKTITILGLMSGTIDLTSNGWGHQVGLQGENDSIFTEKGSKKVEWKDGKGKGSTISWYKTNFDTPEGTNPVAIGMEGMAKGMIWVNGESIGRHWMSYLSPLGKPTQSEYHIPRSFLKPKDNLLVIFEEEAISPDKIAILTVNRDTICSFITENHPPNIRSFASKNQKLERVGENLTPEAFITCPDQKKITAVEFASFGDPSGFCGSFIMGKCNAPSSKKIVEQLCLGKPTCSVPMVKATFTGGNDGCPDVVKTLAIQVKCG* 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2230 768 SUPERFAMILY Galactose-binding domain-like 347 507 IPR008979 -
Mtr4g2230 768 Gene3D Glycosidases 1 287 - -
Mtr4g2230 768 ProSiteProfiles SUEL-type lectin domain profile. 680 768 IPR000922 GO:0030246
Mtr4g2230 768 Pfam Galactose binding lectin domain 688 767 IPR000922 GO:0030246
Mtr4g2230 768 Gene3D - 533 657 - -
Mtr4g2230 768 Pfam Glycosyl hydrolases family 35 1 283 IPR031330 -
Mtr4g2230 768 PRINTS Glycosyl hydrolase family 35 signature 2 20 IPR001944 GO:0004553|GO:0005975
Mtr4g2230 768 PRINTS Glycosyl hydrolase family 35 signature 57 76 IPR001944 GO:0004553|GO:0005975
Mtr4g2230 768 PRINTS Glycosyl hydrolase family 35 signature 114 129 IPR001944 GO:0004553|GO:0005975
Mtr4g2230 768 PRINTS Glycosyl hydrolase family 35 signature 195 210 IPR001944 GO:0004553|GO:0005975
Mtr4g2230 768 PRINTS Glycosyl hydrolase family 35 signature 232 247 IPR001944 GO:0004553|GO:0005975
Mtr4g2230 768 PRINTS Glycosyl hydrolase family 35 signature 251 267 IPR001944 GO:0004553|GO:0005975
Mtr4g2230 768 PRINTS Glycosyl hydrolase family 35 signature 560 574 IPR001944 GO:0004553|GO:0005975
Mtr4g2230 768 PRINTS Glycosyl hydrolase family 35 signature 587 603 IPR001944 GO:0004553|GO:0005975
Mtr4g2230 768 SUPERFAMILY Galactose-binding domain-like 526 672 IPR008979 -
Mtr4g2230 768 PANTHER BETA-GALACTOSIDASE RELATED 1 764 IPR001944 GO:0004553|GO:0005975
Mtr4g2230 768 Pfam Beta-galactosidase jelly roll domain 550 632 IPR025300 -
Mtr4g2230 768 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 116 128 IPR019801 GO:0004553|GO:0005975
Mtr4g2230 768 PANTHER GLYCOSIDE HYDROLASE FAMILY 35 PROTEIN 1 764 - -
Mtr4g2230 768 SUPERFAMILY (Trans)glycosidases 1 287 IPR017853 -
Mtr4g2230 768 Gene3D - 671 768 IPR043159 -
Mtr4g2230 768 Gene3D - 296 507 - -
Mtr4g2230 768 Pfam Beta-sandwich domain in beta galactosidase 291 363 IPR041392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2230 Mtr-Chr4 35697290 35702574 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2230 1 768 Glycoside Hydrolase AT2G16730 60.492 0.0 1007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2230 - - aprc:113864946 1278.46