Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2221 ATGGCGGAAGAATACGAACCCGAAAACGAAGCAGAGGTTGAAGAAGAATTCTCCGTTTGGAAGAGAAACACTCCTCTTCTCTACGATCTCTTCATCTCACACCCTCTCGCATGGCCTTCTCTTACTGTTCAATGGCTTCCTTCACCTCCTCAACCCCACTCCAACTCTTCCTTTAACCTCCACAAACTCCTCCTCGCCACCCACACTTCCGATGAAGAACCCAATTACCTCATGCTCGCTGAATCCACTCTTCCTGGAAACCCATCTCAACCCATCATCGCCACAGATCCTGAAAACCCTATTCTTCCCAAGGTTGAGATTACTCAGAGGATTCTTGTTGATGGGGAGGTGAATAGGGCGCGGGCTATGCCGCAGAATGCGAATGTCGTTGCTGCGAAGACCTGTAATTCGGTGGTTTATGTGTTTGATTTCACTAAGAAGAGAGGGGAGGGTTGTAATCCTGATTTTAGGTTGAAGGGTCATGAGAAAGAAGGGTATGGGTTATCTTGGAGTGGTTTTAAGAATGGGTATCTTTTGAGTGGTTCTAATGATCATAAGATTTGCTTGTGGGATGTTTTTGGTGCTTCTGAAAGTAATGTGCTTGATGCTGTTCATGTTTATGAGGGACATGAAAGTGTTGTTGAAGATGTGTCTTGGCACTTTCACAATGAGAATTTATTTGGATCTGGTGGAGATGACTGCAAGTTGATAATCTGGGACTTGCGGACAAACAAAGCCCAGCATTCACTCAAACCCCATGAAAGGGAGGTGAACTTTGTTTCTTTCAGTCCTTATAGTGAATGGATTTTGGCTACAGCATCCTCAGACACCGACATCGGTCTCTTTGATTTACGGAAGCTTGAGGTGCCGCTGCATTTTCTAAGTAGCCACACAGATGAGGTATTCCAGGTAGAGTGGGATCCTAACCACGAGGGAGTGTTGGCATCTTCTAGTGCTGATAGAAGGCTAATGGTTTGGGACCTTAACAGGATTGGGGATGAGCTGATAGAGGGAGATGAAGAAGGTGGTCCTCCTGAACTACTCTTCTCTCATGGAGGTCACAAAGGAAAAATATCAGATTTTTCATGGAACCAAAACCAGCCATGGGTAATTTCAAGTGTAGCTGAGGATAATTCTTGCCATGTCTGGCAAATGGCTGAAAGCATTTACAATGATGGCGATGATGACAACAATTGGATGGGTAGTGACCAGCACTAA 1218 0.4516 MAEEYEPENEAEVEEEFSVWKRNTPLLYDLFISHPLAWPSLTVQWLPSPPQPHSNSSFNLHKLLLATHTSDEEPNYLMLAESTLPGNPSQPIIATDPENPILPKVEITQRILVDGEVNRARAMPQNANVVAAKTCNSVVYVFDFTKKRGEGCNPDFRLKGHEKEGYGLSWSGFKNGYLLSGSNDHKICLWDVFGASESNVLDAVHVYEGHESVVEDVSWHFHNENLFGSGGDDCKLIIWDLRTNKAQHSLKPHEREVNFVSFSPYSEWILATASSDTDIGLFDLRKLEVPLHFLSSHTDEVFQVEWDPNHEGVLASSSADRRLMVWDLNRIGDELIEGDEEGGPPELLFSHGGHKGKISDFSWNQNQPWVISSVAEDNSCHVWQMAESIYNDGDDDNNWMGSDQH* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2221 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 294 329 IPR001680 GO:0005515
Mtr4g2221 405 Pfam WD domain, G-beta repeat 348 383 IPR001680 GO:0005515
Mtr4g2221 405 Pfam WD domain, G-beta repeat 204 240 IPR001680 GO:0005515
Mtr4g2221 405 Pfam WD domain, G-beta repeat 290 327 IPR001680 GO:0005515
Mtr4g2221 405 Pfam WD domain, G-beta repeat 172 191 IPR001680 GO:0005515
Mtr4g2221 405 Pfam WD domain, G-beta repeat 246 283 IPR001680 GO:0005515
Mtr4g2221 405 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI2-RELATED 1 399 - -
Mtr4g2221 405 PANTHER WD40 REPEAT FAMILY 1 399 - -
Mtr4g2221 405 PRINTS G protein beta WD-40 repeat signature 178 192 IPR020472 -
Mtr4g2221 405 PRINTS G protein beta WD-40 repeat signature 270 284 IPR020472 -
Mtr4g2221 405 PRINTS G protein beta WD-40 repeat signature 314 328 IPR020472 -
Mtr4g2221 405 SUPERFAMILY WD40 repeat-like 114 385 IPR036322 GO:0005515
Mtr4g2221 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 207 249 IPR001680 GO:0005515
Mtr4g2221 405 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 294 329 - -
Mtr4g2221 405 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 158 192 - -
Mtr4g2221 405 ProSitePatterns Trp-Asp (WD) repeats signature. 314 328 IPR019775 -
Mtr4g2221 405 SMART WD40_4 287 327 IPR001680 GO:0005515
Mtr4g2221 405 SMART WD40_4 243 283 IPR001680 GO:0005515
Mtr4g2221 405 SMART WD40_4 344 384 IPR001680 GO:0005515
Mtr4g2221 405 SMART WD40_4 151 191 IPR001680 GO:0005515
Mtr4g2221 405 SMART WD40_4 200 240 IPR001680 GO:0005515
Mtr4g2221 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 158 192 IPR001680 GO:0005515
Mtr4g2221 405 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 207 245 - -
Mtr4g2221 405 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 15 85 IPR022052 -
Mtr4g2221 405 ProSitePatterns Trp-Asp (WD) repeats signature. 178 192 IPR019775 -
Mtr4g2221 405 Gene3D - 2 401 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2221 Mtr-Chr4 35617006 35619570 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2221 207 386 Miscellaneous Gene Families AT5G08390 23.889 7.81e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2221 K10752 - gmx:100791834 675.241