Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mtr4g2220 | ATGGCCATGCAACCACCCTCTCACGGAAATAATGTATTTCCTTTCTATGTCAATGACCTTTACTTAGGTGGACTCGTAGAGTTACAACAACTTCAACCTCCACAATATTATCAACAACAACCACCACAAAATCAACAACAGTGGCAGGGGAATGTTGTTCCCATTATCAATTCTCATGTTCATGCTTCAAACGTCTTAATTTCCCCTGCCCTTGCTGCTCTTTTCGAGAAACAAATGCAGGAAACACACGAGCTCATCAATATACAGAATGATCAAATAAAATTCATGTTACAACAACATACAGAGCAACAAGTGGCTACATTTAGAAGTATGGAAATTTATTCACAACAAATTCTAACAAGAAAGAACGAAGAAATTGCAAAAGTTGTAAAGAAAAAACTAGATTTGGAAAATCTATTAAGAAAATTAGAGGCAGAAAAAAGGGAATTGAAGGGAATAGCTCTGGAAAGGGGAGCGATGGTACTAACTTTGCATACCAAGTTGGAAGAGGAGAAGAAGAGAGTAAGGATGTTGGTGGAAAATGACGCGGAATCAAGTTGTGGTGAAAAGGAAGAAGTCAGAGCTGAAAAGCGTGTAAGACGTGAAAACAATGTGTTTTGTTCAAAGTGTAAGACAAACACTCTTGGTGTCTTATTTCTGCCATGTAGGCATCTCTCTTCATGCAAAGCATGTAATGCTTTACTCCAAACTTGTCCAATTTGTGGAATGGCAAAGAAGGGTATTATCGAGATTCAGAATTCGATTTAA | 768 | 0.3776 | MAMQPPSHGNNVFPFYVNDLYLGGLVELQQLQPPQYYQQQPPQNQQQWQGNVVPIINSHVHASNVLISPALAALFEKQMQETHELINIQNDQIKFMLQQHTEQQVATFRSMEIYSQQILTRKNEEIAKVVKKKLDLENLLRKLEAEKRELKGIALERGAMVLTLHTKLEEEKKRVRMLVENDAESSCGEKEEVRAEKRVRRENNVFCSKCKTNTLGVLFLPCRHLSSCKACNALLQTCPICGMAKKGIIEIQNSI* | 256 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mtr4g2220 | 255 | PANTHER | SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN | 29 | 252 | IPR017066 | - | |
| Mtr4g2220 | 255 | PIRSF | SBP1_RNase_bind | 28 | 254 | IPR017066 | - | |
| Mtr4g2220 | 255 | PANTHER | BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 2-RELATED | 29 | 252 | - | - | |
| Mtr4g2220 | 255 | Coils | Coil | 126 | 156 | - | - | |
| Mtr4g2220 | 255 | SUPERFAMILY | RING/U-box | 202 | 244 | - | - | |
| Mtr4g2220 | 255 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 168 | 252 | IPR013083 | - | |
| Mtr4g2220 | 255 | Pfam | Zinc finger, C3HC4 type (RING finger) | 205 | 243 | - | - | |
| Mtr4g2220 | 255 | ProSiteProfiles | Zinc finger RING-type profile. | 207 | 241 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mtr4g2220 | Mtr-Chr4 | 35614293 | 35615605 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mtr4g2220 | K19042 | - | gmx:100789863 | 135.191 |