Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2216 ATGGATGTTAACAAACTCTTCAGCAACCAACGTTCTCTCAGATTAATTTCTCCTCTATTTGTTTCTTCTTCCCGTACAAGTTTCCTTGGTTGCAACCACAGTCTCAAACCACCTACATCTTCATCTTCATCTTCAGCTTCATCACTTCGTTCTCCAAATAAACGGAACAAGTTAGGACTTCTTCGTCTTCATTCTCCGCGGTTTGTATTCAAAGCTGCTTTAAACTCTCAACTTATTGTTGTTGTTGTCGTTGTTACTTTATCTGCTGTTTCTTGGATTCATTTCACTCTTAACAATAAGAAAAAGAAGAATCTCAACCAGGGACATGCAAAATATGCCTTATCACCACAAGGAAGTAATGTTGCGAACCAGGTCATTGATAACCAGATTCTTGGTTTTCCAGAATTTCAAAGGGATAACACACTGAATGAAATTGGGAAGTTAAATGATCTTAACGGAAAGGACAACCATGTTTTTGAGGACCAAGAGGTCCACCTTCAATTTTTGCAATCTTCTATGGTGCAGGAAACAGCCATGAAGACTCGGACATTAGATTCATCATCATCTGTTCTTGACTCTAGTGTCAATGGTAACTCTGTTCTTGACTCTAGTGTTAATGGTAACAGTTCCTTTAGTGTCAATGGTAACAGTTCTGAGGTATTAGAGGAGCCTTTTTTGTCTGTGACTTTCCAATCAAATTCATTGGCATCTATAGCTTTTGCTGAGGAAATGACTTTACAAGTGGAAGAAAGTCAAGATGTTGCTGACTCTGCTCTTGAGTTGCCTTTGAGTGAGGTCAAACCTGAGCATAACACTTCTTCTGTTGGTTTAGACAAAGCACTTGACACAATCAATGGCCATACTAAAGAAAAAATTGATCTTCATGCCATCAAAAGCAATGTCATCTTTGGTGAATCTGTTAGGGAAGGGCTGTACATGTTTTATGATGACAATAATTTGGCATCTGAATCCATGACACCCCTGAGTAGTATCAAGTCATTATCTCCCAGTACTTCTTTTGTGAATAGCACAGAACTGTCATCAGCTATAAGAAATATCAGCCTGGATGGATTAGGATTATCTGCAGATATTTCTCTACAAAATGCAGAGTACGTTGAAGGAGCAGCTAAAATTTCCAGTCCCAAGGAAGGCTATCCTCCACAACATACAAGTAAAAAATTGAGGAAATCCAGCAGATATGTGAGAGACATGGAAAGGAACTATATGGATCACAATAATAACAATGTTTTGCCCCAGAGTTCCCACGTCAGGGTGCATGTTGATCAGAGAAATGATCAAATCAGGGTCCACGATGGTCTGAAAGTTGATCCTTCAAAGCATCTAAGCAAGTATAATAACTTGCTAAAAGCTGGGAGGTTATGTGAATGTGTAGAATTGCTTAAAGATATGGAAATGAAGGGTTTACTAGATATGACAAAGGTTTATCATGCCAAGTTTTTCAACATCTGCAAGAAACAAAAAGCCGTAAATGAAGCCTTTGACTATGTTAGGCTTATTCCAAATCCAACATTGAGTACATTTAATATGCTTATGTCAGTGTGTGCAAGCTCCCAAGACTCAGAAGGGGCTTTCCAAGTTATTCAGCTTCTTAAGGATGCTCGACTAGATCCTGATTGCAAACTTTATACCACTCTAATATCAACTTGTGGCAAGTGTGGGAAAGTTGATCTAATGTTTGAAGTGTTTCACAAGATGGTTAATTCTGGAGTGGAACCTAACGTTCATACCTACGGGGCACTTATTGATGGTTGTGCTAGAGCTGGTCAAGTAGCTAAAGCATTTGGTGCTTATGGGATAATGAGGTCAAAGAATGTGAAGGCAGATCGTGTTGTTTTCAATGCACTTATAGCTGCATGTGCACAGTCTGGAGCAATGGCTCGTGCCTTTGATGTGATAGCAGAAATGGAAGCTGAAATACAGCCTATTGTGCCAGACCACGTAACTTTTGGCACATTGATGAAGGCATGTGCAAAGGCTGGTCAGGTTGAACGAGCACGTGAAGTGTATAAGATGATACAGCAATATAATATAAAGGGATCTTCAGAAGTTTACACAATTGCAATTAATTCTTGTAGTCAAACTGGAGATTGGGAATTTGCACGTAGTGTATACGATGACATGACCCAGAAAGGGGTGCTCCCTGATGAGATGTTTATGAGTGCACTAATAGATGTTGCTGGACATGCTAAAAAGCTGGAGGCTGCCTTTGATATACTACAACAAGCTCGGAAAGAAGGAGTACAGATTGGAATAATGACATATAGCTCATTGATGGGCGCCTGTAGCAAGGCAAAAAATTGGCAGAGAGCATTGGAGCTATACGAATATCTTAAATCTCTTAAGTTGGTACAAACAGTTTCAACTGTTAATGCTTTGCTCACTGCACTTTGTGATGGGGATCAATTTCAGAAGGCTTTGGAGGTTTTATCTGAAATGAAAGGATTAGGATTGTGCCCAAACAGTATCACATTCTCAATACTTATAGTGGCAAGTGAGAAGAAGGATGATATGGAAGCTGCTCAAATGCTCCTTTCTCAAGCCAAAAAGGATGGTGCAGCACCTACTCTCATCATGTGTCGATGCATAATTGGAATGTGCCTGCGAAGATTTGAGAAGGCTTGTCTTGTTGGTGAAACTGTTTTATCTTTTGACTCAGGGCGGCCACAAGTTAATAATGAATGGACATCACTGGCTTTAATGGTGTATCGCGAAACAATAGGAGCTGGTGAAAAGCCTACAAGTCAAATATTGTCACAAGTTCTGGGATGCTTGAAATTCCCTTATGATACATATGTGAGAAATAGACTTGTTGAGAACCTGGGAGTAACTGCTGAAAGCTCAAAAACTTCAAACCTCTGTTCGTTGATAGATGGGTTTGGCGAATATGATCCTCGCGCTTTTTCAATACTTGAGGAAGCTGCTTCATATGGAGTTGTTCCATCTGTATCACTTAAAATGAATCCAATTGTTATCGATGCTAAAGAGTTGGATGCTTTTACTGCTGAGGTATACCTCTTAACTATTTTGAAAGGTCTCAAGCATCGACTAGCAGCAGGTGCAAAACTACCCAATATAATCATTTTACTGCCTGTAGAAGAAACAAAACTTTTGTCTCCGGAAGGGGAAAAGACTATTATACTTGCAGAAAGAGGTGGCCAAGCAGTTGCAGCGTTGTTTAGAAGGCTTCATATTCCTTACCAGGGTAGTGAATCAAATGGGAAACTTAGAATAAACAGTCTGGGCTTGATAAAATGGTATCAGCCAAAGCTTGCATCTCCATTCGGCGGTTTCCAAGGTGATTGGAGCTCAACCCAATTACGACTCGGCAAAAATATTAGCAATCAGCAACGAAACATTCGAACTGGAAATCTATCTCTGGACTAA 3405 0.3982 MDVNKLFSNQRSLRLISPLFVSSSRTSFLGCNHSLKPPTSSSSSSASSLRSPNKRNKLGLLRLHSPRFVFKAALNSQLIVVVVVVTLSAVSWIHFTLNNKKKKNLNQGHAKYALSPQGSNVANQVIDNQILGFPEFQRDNTLNEIGKLNDLNGKDNHVFEDQEVHLQFLQSSMVQETAMKTRTLDSSSSVLDSSVNGNSVLDSSVNGNSSFSVNGNSSEVLEEPFLSVTFQSNSLASIAFAEEMTLQVEESQDVADSALELPLSEVKPEHNTSSVGLDKALDTINGHTKEKIDLHAIKSNVIFGESVREGLYMFYDDNNLASESMTPLSSIKSLSPSTSFVNSTELSSAIRNISLDGLGLSADISLQNAEYVEGAAKISSPKEGYPPQHTSKKLRKSSRYVRDMERNYMDHNNNNVLPQSSHVRVHVDQRNDQIRVHDGLKVDPSKHLSKYNNLLKAGRLCECVELLKDMEMKGLLDMTKVYHAKFFNICKKQKAVNEAFDYVRLIPNPTLSTFNMLMSVCASSQDSEGAFQVIQLLKDARLDPDCKLYTTLISTCGKCGKVDLMFEVFHKMVNSGVEPNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKADRVVFNALIAACAQSGAMARAFDVIAEMEAEIQPIVPDHVTFGTLMKACAKAGQVERAREVYKMIQQYNIKGSSEVYTIAINSCSQTGDWEFARSVYDDMTQKGVLPDEMFMSALIDVAGHAKKLEAAFDILQQARKEGVQIGIMTYSSLMGACSKAKNWQRALELYEYLKSLKLVQTVSTVNALLTALCDGDQFQKALEVLSEMKGLGLCPNSITFSILIVASEKKDDMEAAQMLLSQAKKDGAAPTLIMCRCIIGMCLRRFEKACLVGETVLSFDSGRPQVNNEWTSLALMVYRETIGAGEKPTSQILSQVLGCLKFPYDTYVRNRLVENLGVTAESSKTSNLCSLIDGFGEYDPRAFSILEEAASYGVVPSVSLKMNPIVIDAKELDAFTAEVYLLTILKGLKHRLAAGAKLPNIIILLPVEETKLLSPEGEKTIILAERGGQAVAALFRRLHIPYQGSESNGKLRINSLGLIKWYQPKLASPFGGFQGDWSSTQLRLGKNISNQQRNIRTGNLSLD* 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2216 1134 Gene3D Tetratricopeptide repeat domain 647 717 IPR011990 GO:0005515
Mtr4g2216 1134 Gene3D Tetratricopeptide repeat domain 485 646 IPR011990 GO:0005515
Mtr4g2216 1134 Pfam PPR repeat 617 643 IPR002885 -
Mtr4g2216 1134 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 687 721 IPR002885 -
Mtr4g2216 1134 Pfam Pentatricopeptide repeat domain 815 873 IPR002885 -
Mtr4g2216 1134 Pfam PPR repeat family 545 593 IPR002885 -
Mtr4g2216 1134 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 757 791 IPR002885 -
Mtr4g2216 1134 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 545 579 IPR002885 -
Mtr4g2216 1134 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 88 1134 - -
Mtr4g2216 1134 Gene3D Tetratricopeptide repeat domain 731 932 IPR011990 GO:0005515
Mtr4g2216 1134 TIGRFAM PPR: pentatricopeptide repeat domain 795 827 IPR002885 -
Mtr4g2216 1134 TIGRFAM PPR: pentatricopeptide repeat domain 690 723 IPR002885 -
Mtr4g2216 1134 TIGRFAM PPR: pentatricopeptide repeat domain 548 581 IPR002885 -
Mtr4g2216 1134 TIGRFAM PPR: pentatricopeptide repeat domain 654 685 IPR002885 -
Mtr4g2216 1134 TIGRFAM PPR: pentatricopeptide repeat domain 513 546 IPR002885 -
Mtr4g2216 1134 TIGRFAM PPR: pentatricopeptide repeat domain 760 790 IPR002885 -
Mtr4g2216 1134 TIGRFAM PPR: pentatricopeptide repeat domain 582 615 IPR002885 -
Mtr4g2216 1134 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 792 826 IPR002885 -
Mtr4g2216 1134 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 652 686 IPR002885 -
Mtr4g2216 1134 Coils Coil 837 857 - -
Mtr4g2216 1134 Pfam Pentacotripeptide-repeat region of PRORP 660 802 IPR033443 -
Mtr4g2216 1134 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 580 614 IPR002885 -
Mtr4g2216 1134 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 615 645 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2216 549 874 Glycosyltransferase AT1G05670 24.159 1.92e-29 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2216 - - gmx:100814164 1550.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2216 4 35578053 35589862 Mtr4g2216 4 35578053 35589862 ECH