Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2140 ATGGATCATCGCACTCTTCTTCTCTTCGTCGTTCTTTTCATCTTCTCCGTCTCGGCATTCTCCACGCCCGACGAAGGAGAAGATCCAATAATCCGTCAGGTGGTAGACGAAGAAGGAGTGCGGTTGGGAGCAGAGCATCACTTTAACCTATTTAAACATAAGTTTGGGAAGGTTTATTCTTCCAAGGATGAACATGATTACAGGTTTAAAATCTTCAAGTCTAATCTGAACCGTGCTAAGAGGCATCAATTGATGGATCCTTCGGCGGTTCACGGTGTTACAAGATTCTCCGATCTTACCCCGAGAGAGTTTCGTAAGAGCGTTTTGGGATTGAGAGGGGTGGGGTTGCCGAAAGATGCTAATGCAGCCCCGATTCTTCCGACAGATAATCTTCCCAAGGATTTTGATTGGAGAGAGAAAGGAGCCGTTACTGCCGTTAAAAATCAGGGCTCTTGTGGATCATGCTGGAGTTTCAGCACAACCGGTGCACTTGAAGGTGCTCACTTTCTGTCGACCGGAAAACTTGTCAGTCTTAGCGAGCAACAACTTGTTGATTGTGATCATGAGTGTGATCCTGAGCAACCAGGTTCTTGTGATGCCGGGTGCAATGGTGGTCTAATGAATAGTGCTTTTGAGTACATTTTAAAATCCGGTGGGGTGATGCGCGAAGAAGACTATCCTTATTCTGGTACTGATCGTGGATCATGCAAGTTTGACAAGAAAAAAATTGCAGCATCAGTAGCAAATTTCAGTGTTGTTTCACTTGATGAAGACCAGATTGCCGCTAATCTTGTCAAGAACGGTCCTCTTGCTATTGCCTTGAATGCCGTATATATGCAAACGTACGTTGGAGGAGTATCATGTCCATACATATGCTCAAAGAGACTAGATCATGGAGTGTTACTGGTGGGATATGGATCTGGAGCCTATTCGCCTATTAGGTTGAAGGAGAAGCCATATTGGATAATTAAAAACTCATGGGGTGAGACTTGGGGAGAAAATGGATACTATAAAATATGCAGGGGACGAAATATCTGCGGAGTGGACTCTATGGTTTCTACTGTGGCTGCCGTTCATACTACTACCTAG 1089 0.4472 MDHRTLLLFVVLFIFSVSAFSTPDEGEDPIIRQVVDEEGVRLGAEHHFNLFKHKFGKVYSSKDEHDYRFKIFKSNLNRAKRHQLMDPSAVHGVTRFSDLTPREFRKSVLGLRGVGLPKDANAAPILPTDNLPKDFDWREKGAVTAVKNQGSCGSCWSFSTTGALEGAHFLSTGKLVSLSEQQLVDCDHECDPEQPGSCDAGCNGGLMNSAFEYILKSGGVMREEDYPYSGTDRGSCKFDKKKIAASVANFSVVSLDEDQIAANLVKNGPLAIALNAVYMQTYVGGVSCPYICSKRLDHGVLLVGYGSGAYSPIRLKEKPYWIIKNSWGETWGENGYYKICRGRNICGVDSMVSTVAAVHTTT* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2140 362 Pfam Papain family cysteine protease 131 354 IPR000668 GO:0006508|GO:0008234
Mtr4g2140 362 CDD Peptidase_C1A 132 355 IPR039417 -
Mtr4g2140 362 SUPERFAMILY Cysteine proteinases 46 355 IPR038765 -
Mtr4g2140 362 Pfam Cathepsin propeptide inhibitor domain (I29) 48 104 IPR013201 -
Mtr4g2140 362 PANTHER CYSTEINE PROTEASE RD19C-RELATED 24 357 - -
Mtr4g2140 362 Gene3D Cysteine proteinases 27 356 - -
Mtr4g2140 362 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 24 357 - -
Mtr4g2140 362 PRINTS Papain cysteine protease (C1) family signature 149 164 IPR000668 GO:0006508|GO:0008234
Mtr4g2140 362 PRINTS Papain cysteine protease (C1) family signature 298 308 IPR000668 GO:0006508|GO:0008234
Mtr4g2140 362 PRINTS Papain cysteine protease (C1) family signature 320 326 IPR000668 GO:0006508|GO:0008234
Mtr4g2140 362 SMART pept_c1 131 356 IPR000668 GO:0006508|GO:0008234
Mtr4g2140 362 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 296 306 IPR025660 -
Mtr4g2140 362 SMART Inhibitor_I29_2 48 104 IPR013201 -
Mtr4g2140 362 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 320 339 IPR025661 -
Mtr4g2140 362 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 149 160 IPR000169 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2140 Mtr-Chr4 34897949 34899992 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2140 K01373 - gmx:100812198 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2140 4 34897949 34899992 Mtr4g2140 4 34897949 34899992 ECH